InsightSoftwareConsortium/ITKElastix

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An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

Stars: 282
Forks: 29
Open beginner issues: 0
Indexed issues: 67
Avg merge: 16h 28m
Merged PRs (30d): 8

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 17, 2026
Latest indexed: Sep 17, 2026
Contributing guide: No contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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67 open issues indexed

Live JavaScript API Demo (https://itk-wasm-elastix-app-js.on.fleek.co): "Domain suspended or not configured" Open

InsightSoftwareConsortium/ITKElastix#406 · 1 comment · 1 assignee · Opened Sep 17, 2026
registration results are chunked, scale issue? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#370 · 1 comment · Opened Feb 11, 2026
Multithreading and GPU acceleration Open

Difficulty 4/5 3-5 days Newbie friendliness 28/100

InsightSoftwareConsortium/ITKElastix#350 · 3 comments · Opened Oct 16, 2025
Unclear BSpline Grid Coordinate System Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#343 · 2 comments · Opened Jun 23, 2025
Operation aborted Open

InsightSoftwareConsortium/ITKElastix#341 · 12 comments · 1 assignee · Opened Apr 24, 2025
Registration of multispectral images Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

InsightSoftwareConsortium/ITKElastix#330 · 1 comment · Opened Mar 27, 2025
Extremely slow (compared to SimpleITK - Elastix) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#307 · 8 comments · Opened Oct 26, 2024
itk.elastix_registration_method does not produce any output and reports the error message "-1073741819(0xC0000005)" Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#305 · 2 comments · Opened Sep 23, 2024
itk-elastix cannot be used in Ubuntu 22.04 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#298 · 3 comments · Opened Aug 19, 2024
Encountering segmentation fault when running `elastix_registration_method()` on both 2D and 3D images Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#295 · 8 comments · Opened Jun 28, 2024
Error of multi-metric and multi-channel image registration Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#293 · 1 comment · Opened Jun 3, 2024
Transform coordinates from moving images space to fixed images space Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

InsightSoftwareConsortium/ITKElastix#292 · 1 comment · Opened May 23, 2024
ErodeMask and dilating mask Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#286 · Opened May 10, 2024
Inverse transform Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#285 · 11 comments · Opened Apr 25, 2024
Reset random seed for deterministic registration Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#279 · 7 comments · Opened Apr 16, 2024
Groupwise registration of 4D objects and registration with mask Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

InsightSoftwareConsortium/ITKElastix#276 · Opened Mar 16, 2024
Error loading initial transform and applying mask Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#274 · Opened Mar 6, 2024
Extraction deformation field after 3D registration. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#273 · Opened Mar 6, 2024
register these two dicom file Open

Difficulty 4/5 3-5 days Newbie friendliness 18/100

InsightSoftwareConsortium/ITKElastix#272 · 1 comment · Opened Mar 4, 2024
SWIG build warning for `itk::ElastixLogLevel` Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#261 · 3 comments · 1 reaction · Opened Nov 1, 2023
CORS on loading 3D data Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#259 · 2 comments · Opened Oct 27, 2023
`itk.elastix_registration_method` sometimes crashes silently Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#255 · 3 comments · Opened Oct 10, 2023
`itkwasm-elastix` Site Feedback Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#253 · 1 reaction · Opened Oct 2, 2023
Histology image registration Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#252 · 5 comments · Opened Oct 2, 2023
How to convert ITK transform into Elastix transform parameters file? Open

InsightSoftwareConsortium/ITKElastix#246 · 14 comments · 2 assignees · Opened Sep 12, 2023
External initial transform causes a failure in ConvertToItkTransform Open

InsightSoftwareConsortium/ITKElastix#245 · 16 comments · 1 assignee · Opened Sep 12, 2023
Update documentation Open

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

InsightSoftwareConsortium/ITKElastix#244 · Opened Aug 28, 2023
Order of transformparameter files when computing inverse Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#229 · 1 comment · 1 reaction · Opened Jun 21, 2023
Large slowdown of elastix_registration_method after reading a DICOM series Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#226 · 4 comments · Opened Jun 9, 2023
Asking question about registration！ Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

InsightSoftwareConsortium/ITKElastix#225 · Opened Jun 1, 2023
Asking questions & submitting issues! Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#221 · Opened May 19, 2023
Error when using keyword arguments for the itk.elastix_registration_method Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

InsightSoftwareConsortium/ITKElastix#212 · 3 comments · Opened May 10, 2023
itk.ParameterObject.New() This line of code takes 23 seconds to execute Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

InsightSoftwareConsortium/ITKElastix#210 · 2 comments · Opened Apr 17, 2023
ITK Elastix deformation field Issue Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#209 · Opened Apr 4, 2023
itk::ERROR: MultiMetricMultiResolutionRegistration on multi-channel image Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#208 · Opened Apr 3, 2023
itk-elastix-opencl lags itk-elastix on pypi Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#202 · 4 comments · Opened Feb 16, 2023
Add napari visualization notebook Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

InsightSoftwareConsortium/ITKElastix#201 · Opened Feb 16, 2023
Add itkwidgets compare functionality in first notebook Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#200 · 1 reaction · Opened Feb 16, 2023
Enable Windows notebook CI tests Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#185 · Opened Dec 7, 2022
use transformix for point transform Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#168 · 2 comments · Opened Sep 25, 2022
No option to set number of threads for Transformix Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#163 · 13 comments · Opened Aug 19, 2022
Feature: Write log to file without writing transform parameters Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

InsightSoftwareConsortium/ITKElastix#162 · 3 comments · Opened Aug 17, 2022
MultiMetricMultiResolutionRegistration fails when SetNumberOfThreads is used Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

InsightSoftwareConsortium/ITKElastix#160 · 11 comments · Opened Aug 9, 2022
Documentation and import fixing Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

InsightSoftwareConsortium/ITKElastix#158 · 6 comments · Opened Jul 14, 2022
Errors in elastix/parameter file lead to unclear error messages Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#157 · 2 comments · Opened Jul 14, 2022
Point set alignment Open

InsightSoftwareConsortium/ITKElastix#156 · 1 comment · 1 assignee · Opened Jun 22, 2022
How to get a metric for the quality of the registration? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#153 · 1 comment · Opened May 10, 2022
Get Affine Transformation Matrix from TransformParameters Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#145 · 33 comments · Opened Mar 10, 2022
Problem when opening a big TIF file Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

InsightSoftwareConsortium/ITKElastix#144 · 8 comments · Opened Mar 10, 2022
Python wrappings don't work in RelWithDebInfo mode Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

InsightSoftwareConsortium/ITKElastix#143 · Opened Feb 21, 2022

InsightSoftwareConsortium/ITKElastix

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