InsightSoftwareConsortium/ITKElastix

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An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

Stars: 281
Forks: 29
Open beginner issues: 0
Indexed issues: 67
Avg merge: 16h 28m
Merged PRs (30d): 8

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 15, 2026
Latest indexed: Sep 17, 2026
Contributing guide: No contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

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67 open issues indexed

"HasKey" or similar method for the wrapped ParameterObject Open

InsightSoftwareConsortium/ITKElastix#36 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 17, 2026
enumeration support for the wrapping of ParameterObject Open

InsightSoftwareConsortium/ITKElastix#37 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 17, 2026
No option to output transformed pointset file to memory in transformix. Open

InsightSoftwareConsortium/ITKElastix#76 · 1 comment · 0 reactions · 2 assignees · Indexed Sep 17, 2026
[Progress Bars] Including them to show status of iterations for each parameter Open

InsightSoftwareConsortium/ITKElastix#77 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
[Elastix Parameters --> ITK Transforms] Provide function to convert Elastix's TransformParameter.txt to ITK transforms Open

InsightSoftwareConsortium/ITKElastix#79 · 15 comments · 0 reactions · 3 assignees · Indexed Sep 17, 2026
itk.imread() gives non-fatal dynamic cast errors in the lldb python debugger. Open

InsightSoftwareConsortium/ITKElastix#105 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
transformix_jacobian tries to use files Open

InsightSoftwareConsortium/ITKElastix#108 · 10 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Preprocessing example notebooks Open

InsightSoftwareConsortium/ITKElastix#119 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Postprocessing example notebook Open

InsightSoftwareConsortium/ITKElastix#120 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Zarr spatial transformation serialization notebook. Open

InsightSoftwareConsortium/ITKElastix#121 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Example notebook demonstrating integration with (py)clesperanto. Open

InsightSoftwareConsortium/ITKElastix#122 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Example notebook for reading / writing point sets from standard file formats Open

InsightSoftwareConsortium/ITKElastix#123 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Connect to project MONAI Open

InsightSoftwareConsortium/ITKElastix#126 · 4 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Transfer PointSet from Moving Image to Fixed Image Open

InsightSoftwareConsortium/ITKElastix#135 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Error on grid spacing Open

InsightSoftwareConsortium/ITKElastix#139 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Error when using GradientDifference or NormalizedGradientCorrelation Metric Open

InsightSoftwareConsortium/ITKElastix#140 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Need Help: ITK ERROR: ElastixRegistrationMethod(00000187F232D140) Open

InsightSoftwareConsortium/ITKElastix#141 · 4 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Python wrappings don't work in RelWithDebInfo mode Open

InsightSoftwareConsortium/ITKElastix#143 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Problem when opening a big TIF file Open

InsightSoftwareConsortium/ITKElastix#144 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Get Affine Transformation Matrix from TransformParameters Open

InsightSoftwareConsortium/ITKElastix#145 · 33 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How to get a metric for the quality of the registration? Open

InsightSoftwareConsortium/ITKElastix#153 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Point set alignment Open

InsightSoftwareConsortium/ITKElastix#156 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Errors in elastix/parameter file lead to unclear error messages Open

InsightSoftwareConsortium/ITKElastix#157 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Documentation and import fixing Open

InsightSoftwareConsortium/ITKElastix#158 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
MultiMetricMultiResolutionRegistration fails when SetNumberOfThreads is used Open

InsightSoftwareConsortium/ITKElastix#160 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Feature: Write log to file without writing transform parameters Open

InsightSoftwareConsortium/ITKElastix#162 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
No option to set number of threads for Transformix Open

InsightSoftwareConsortium/ITKElastix#163 · 13 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
use transformix for point transform Open

InsightSoftwareConsortium/ITKElastix#168 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Enable Windows notebook CI tests Open

InsightSoftwareConsortium/ITKElastix#185 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add itkwidgets compare functionality in first notebook Open

InsightSoftwareConsortium/ITKElastix#200 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Add napari visualization notebook Open

InsightSoftwareConsortium/ITKElastix#201 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
itk-elastix-opencl lags itk-elastix on pypi Open

InsightSoftwareConsortium/ITKElastix#202 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
itk::ERROR: MultiMetricMultiResolutionRegistration on multi-channel image Open

InsightSoftwareConsortium/ITKElastix#208 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
ITK Elastix deformation field Issue Open

InsightSoftwareConsortium/ITKElastix#209 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
itk.ParameterObject.New() This line of code takes 23 seconds to execute Open

InsightSoftwareConsortium/ITKElastix#210 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Error when using keyword arguments for the itk.elastix_registration_method Open

InsightSoftwareConsortium/ITKElastix#212 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Asking questions & submitting issues! Open

InsightSoftwareConsortium/ITKElastix#221 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Asking question about registration！ Open

InsightSoftwareConsortium/ITKElastix#225 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Large slowdown of elastix_registration_method after reading a DICOM series Open

InsightSoftwareConsortium/ITKElastix#226 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Order of transformparameter files when computing inverse Open

InsightSoftwareConsortium/ITKElastix#229 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 17, 2026
Update documentation Open

InsightSoftwareConsortium/ITKElastix#244 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
External initial transform causes a failure in ConvertToItkTransform Open

InsightSoftwareConsortium/ITKElastix#245 · 16 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
How to convert ITK transform into Elastix transform parameters file? Open

InsightSoftwareConsortium/ITKElastix#246 · 14 comments · 0 reactions · 2 assignees · Indexed Sep 17, 2026
Histology image registration Open

InsightSoftwareConsortium/ITKElastix#252 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
`itkwasm-elastix` Site Feedback Open

InsightSoftwareConsortium/ITKElastix#253 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
`itk.elastix_registration_method` sometimes crashes silently Open

InsightSoftwareConsortium/ITKElastix#255 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
CORS on loading 3D data Open

InsightSoftwareConsortium/ITKElastix#259 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
SWIG build warning for `itk::ElastixLogLevel` Open

InsightSoftwareConsortium/ITKElastix#261 · 3 comments · 1 reaction · 0 assignees · Indexed Sep 17, 2026
register these two dicom file Open

InsightSoftwareConsortium/ITKElastix#272 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Extraction deformation field after 3D registration. Open

InsightSoftwareConsortium/ITKElastix#273 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026

InsightSoftwareConsortium/ITKElastix

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