INCATools/ubergraph

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Integrated OBO ontology store

Stars: 53
Forks: 6
Open beginner issues: 0
Indexed issues: 34

Dominant language: Makefile
License: BSD-3-Clause
Last GitHub push: Jul 18, 2026
Latest indexed: Sep 17, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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34 issues indexed so far

Extend UI to support a curie-curie view to help with Translator provenance Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

INCATools/ubergraph#177 · Opened Jul 30, 2026
Provenance? Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

INCATools/ubergraph#174 · 1 comment · Opened Jun 7, 2026
Add text embedding vectors Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

INCATools/ubergraph#168 · Opened Jul 31, 2025
Add Upheno Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#163 · 2 comments · Opened Mar 28, 2025
add FBbt to coherency check Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

INCATools/ubergraph#161 · Opened Feb 14, 2025
Ensure docker file matches the actually used image Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

INCATools/ubergraph#159 · Opened Oct 16, 2024
Weirdness in Ubergraph around RO and BFO labels (two labels for one CURIE) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

INCATools/ubergraph#156 · 1 comment · Opened Sep 26, 2024
Is there a place for sharing/storing SPARQL queries on the Ubergraph? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/ubergraph#148 · Opened Apr 18, 2024
Update Biolink version Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

INCATools/ubergraph#145 · Opened Mar 11, 2024
cell_by_type_location_species.rq should come with a health warning Open

INCATools/ubergraph#142 · 1 assignee · Opened Dec 21, 2023
Add simple subsumption GLRC query Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#141 · Opened Dec 21, 2023
Add GRLC query that restricts anatomy by subset as well as location Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#140 · Opened Dec 21, 2023
Add GRLC query that restricts cell type by subset as well as location Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

INCATools/ubergraph#139 · Opened Dec 21, 2023
New GRLC queries to add Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#138 · Opened Dec 18, 2023
Add Allen Brain Atlas ontologies (with bridges) Open

INCATools/ubergraph#137 · 2 comments · 2 assignees · Opened Dec 18, 2023
Add bridges from Uberon/CL to Taxon-specific ontologies Open

INCATools/ubergraph#136 · 1 assignee · Opened Dec 18, 2023
Add some obo-db-ingests into ubergraph (EC, RHEA, SwissLipid) Open

Difficulty 4/5 3-5 days Newbie friendliness 28/100

INCATools/ubergraph#134 · 1 comment · Opened Dec 11, 2023
HAO base procedure is removing depiction individuals Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

INCATools/ubergraph#124 · Opened Jun 8, 2023
A few ontologies have stray dc:descriptions Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#121 · 2 comments · Opened Apr 1, 2023
adding knowledge graph links with different semantics Open

question

Difficulty 5/5 Over a week Newbie friendliness 20/100

INCATools/ubergraph#117 · 3 comments · Opened Jan 10, 2023
'mature T cell' has direct superclass 'material entity' Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/ubergraph#105 · Opened Nov 19, 2022
Ensure nonredundant doesn't have subClassOf cycles Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

INCATools/ubergraph#104 · Opened Nov 19, 2022
eliminate OBO hash IRIs Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/ubergraph#102 · 6 comments · 1 reaction · Opened Nov 16, 2022
add ExO Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 20/100

INCATools/ubergraph#93 · Opened Oct 11, 2022
Use ELK 0.5+ in coherency check Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

INCATools/ubergraph#78 · 1 comment · Opened Jul 13, 2022
add issue generation to coherency check Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#75 · 1 comment · Opened Jun 22, 2022
obsolete URL at sparqlfun Open

Difficulty 1/5 Under an hour Newbie friendliness 30/100

INCATools/ubergraph#73 · 1 reaction · Opened Jun 21, 2022
QC of new Ubergraph builds Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/ubergraph#33 · 1 comment · Opened Nov 4, 2021
Add DO Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#20 · 1 comment · Opened May 13, 2021
Provide downloadable artifacts Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/ubergraph#19 · 1 comment · Opened May 13, 2021
normalize all rdfs:label values when loading Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

INCATools/ubergraph#15 · Opened Mar 26, 2021
describe which entailment regime is used Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/ubergraph#13 · Opened Mar 25, 2021
Add instructions on how to set up an ubergraph instance with a custom set of ontologies Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

INCATools/ubergraph#12 · 7 comments · Opened Mar 24, 2021
Add CHIRO ontology Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

INCATools/ubergraph#9 · Opened Feb 16, 2021

INCATools/ubergraph

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