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ContextLab

32 indexed repositories · View on GitHub

hypertools
A Python toolbox for gaining geometric insights into high-dimensional data

Python · 1887 stars
hypertools-paper-notebooks
Supporting notebooks and data from hypertools paper

Jupyter Notebook · 148 stars
computational-neuroscience
Short undergraduate course taught at University of Pennsylvania on computational and theoretical neuroscience. Provides an introduction ...

TeX · 53 stars
timecorr
Estimate dynamic high-order correlations in multivariate timeseries data

Python · 41 stars
supereeg
Infer activity throughout the brain from a small(ish) number of electrodes using Gaussian process regression

Python · 38 stars
davos
Import packages in Python, even if they aren't installed!

TeX · 37 stars
chatify
Add ipython magic commands to Jupyter notebooks that provide LLM-driven enhancements

Python · 23 stars
quail
A python toolbox for analyzing and plotting free recall data

Python · 21 stars
CDL-tutorials
Repo containing useful tutorials on different topics, methods, software tools, and packages used by the CDL

Jupyter Notebook · 17 stars
data-wrangler
Wrangle messy numerical, image, and text data into consistent well-organized formats

Python · 10 stars
clustrix
Seamless distributed computing for Python functions

Python · 10 stars
Dartmouth-OpenBCI-Hackathon
Open BCI demo

Python · 9 stars
autoFR
Template for a free recall experiment with automatic audio transcription

JavaScript · 8 stars
supereeg_paper
paper analyses

Jupyter Notebook · 7 stars
dream-stream
Netflix for lucid dreams

TypeScript · 4 stars
llmXive
llmXive is an LLM-driven system for automating scientific discovery

Python · 4 stars
CDL-docker-stacks
Lightweight, customizable, hierarchically built docker images for common neuro/data science applications. Pre-built images available on ...

Python · 3 stars
hypertools-paper
repo for the HyperTools paper

TeX · 3 stars
orchestrator
A convenient wrapper for LangGraph, MCP, model spec, and other AI agent control systems

Python · 3 stars
brainfit-task
a package for acquiring fitness tracker (Fitbit) and cognitive task (JsPsych) data on the Amazon Mechanical Turk platform

JavaScript · 2 stars
12 more repositories live on View on GitHub

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456 open issues indexed

Restore SGE support: removed from v0.2.0 as never verified against a real scheduler Open

ContextLab/clustrix#141 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restore Kubernetes execution and provisioning: removed from v0.2.0 as never verified against a real cluster Open

ContextLab/clustrix#142 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restore the AWS execution backend: removed from v0.2.0 as never verified end to end Open

ContextLab/clustrix#143 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restore the GCP execution backend: removed from v0.2.0 as never verified end to end Open

ContextLab/clustrix#144 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restore the Azure execution backend: removed from v0.2.0 as never verified end to end Open

ContextLab/clustrix#145 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restore the Lambda Cloud backend: removed from v0.2.0 as never verified end to end Open

ContextLab/clustrix#146 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Make Clustrix a data mover: stage declared inputs and outputs (reverses the "not a data mover" limitation) Open

enhancement

ContextLab/clustrix#151 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Streaming: fetch only the parts of a dataset an analysis actually touches (split from #151) Open

ContextLab/clustrix#155 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Master: deferred work — future functionality and long-horizon efforts Open

enhancement epic

ContextLab/clustrix#160 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
parallel=True: the returned shape depends on cores and on the loop length, and what it should be is undecided Open

ContextLab/clustrix#170 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
SSH config writes are not idempotent, and tests write fixture hosts into the user's real ~/.ssh/config (164 duplicate blocks observed) Open

ContextLab/clustrix#175 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Example pipelines: 50 of 117 validate; the remaining 67 classified Open

bug documentation enhancement high-priority

ContextLab/orchestrator#104 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Complete YAML Pipeline Specification Implementation Open

architecture enhancement

ContextLab/orchestrator#320 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Implement LLM-Generated Pipeline Intention and Architecture Summaries Open

enhancement

ContextLab/orchestrator#321 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Implement Result API - log, outputs, qc() methods Open

architecture enhancement

ContextLab/orchestrator#332 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Implement structured output variables (vars field) Open

enhancement

ContextLab/orchestrator#335 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Fix ConfigurationManager API mismatch: register_config_type vs register_config Open

bug

ContextLab/orchestrator#353 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Bring the legacy test suite to green (~540 failures outside the blocking layer) Open

bug epic high-priority

ContextLab/orchestrator#354 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Stop textually splicing variable values into expression source in ControlFlowAutoResolver._safe_eval Open

architecture bug

ContextLab/orchestrator#427 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Remove module-scope langchain imports so the package imports without the langgraph extra Open

architecture bug

ContextLab/orchestrator#428 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[EPIC] Phase 5: retire the frozen competing implementations (321 modules) Open

architecture epic

ContextLab/orchestrator#430 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Validation rejects {{ $item }} as a syntax error; the runtime rewrites it Open

ContextLab/orchestrator#474 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
`foreach:` is not a for_each alias — no engine expands it Open

ContextLab/orchestrator#475 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
action_loop's until: condition is never evaluated — the loop always runs once Open

ContextLab/orchestrator#476 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Loop constructs leak each other's variables as stale or meaningless values Open

ContextLab/orchestrator#477 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
create_parallel_queue reports success while silently skipping a step that did not render Open

ContextLab/orchestrator#478 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
HuggingFace Inference API provider Open

architecture enhancement

ContextLab/orchestrator#484 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
yet another redesign Open

ContextLab/orchestrator#485 · 9 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Scale the agentic runtime to distributed workers and messaging Open

architecture enhancement

ContextLab/orchestrator#487 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Govern self-authored tools, skills, and reusable plans as capabilities Open

architecture enhancement

ContextLab/orchestrator#488 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Build governed cross-run memory, retrieval, and solution reuse Open

architecture enhancement

ContextLab/orchestrator#489 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Calibrate and risk-tier independent artifact review Open

architecture enhancement

ContextLab/orchestrator#490 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Production hardening for unattended and side-effecting agentic runs Open

architecture enhancement

ContextLab/orchestrator#491 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
MVP: evidence-driven recursive agentic runtime Open

architecture enhancement epic

ContextLab/orchestrator#492 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Deeper skill composition, and the last step of the loop: the forged skill actually used Open

ContextLab/claude-skill-compounder#19 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Real conversion rate: 10.5% of nudged sessions invoke skill-compounder Open

ContextLab/claude-skill-compounder#30 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
EPIC: Three tiers of compounding: note, reminder, skill Open

ContextLab/claude-skill-compounder#31 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
No forge has run since the diet landed: round cap, 30-minute target, apply and verdict rows all unexercised Open

enhancement

ContextLab/claude-skill-compounder#34 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
E2E: run under a genuinely fresh CLAUDE_CONFIG_DIR once a token can be handed in Open

ContextLab/claude-skill-compounder#42 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
on-the-fly interactive labels Open

low priority medium effort

ContextLab/hypertools#111 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
on-the-fly decoding Open

low priority medium effort

ContextLab/hypertools#112 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
grand challenge: streaming brain decoding Open

awesome enhancement help wanted high effort pie in the sky

ContextLab/hypertools#113 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add soundtrack Open

medium effort

ContextLab/hypertools#163 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Suggestion: animating uncertainty Open

enhancement low effort

ContextLab/hypertools#225 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
1.1.0: audit follow-ups (gallery repeats, tutorial coverage, native usage) Open

documentation

ContextLab/hypertools#284 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Fold-in candidates from the 1.1 examples/tutorials audit (native features to add) Open

enhancement

ContextLab/hypertools#285 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
integrate theoremsearch Open

ContextLab/llmXive#111 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Spec B: theorem_searcher agent — theorem-statement artifacts for math-theory projects Open

enhancement

ContextLab/llmXive#114 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
High quality from small models Open

ContextLab/llmXive#216 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
stuff to work on while idle Open

ContextLab/llmXive#262 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

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