ContextLab/supereeg

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Infer activity throughout the brain from a small(ish) number of electrodes using Gaussian process regression

Stars: 38
Forks: 19
Open beginner issues: 0
Indexed issues: 67

Dominant language: Python
License: No license data
Last GitHub push: Jan 5, 2022
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted
PR merge metrics: No merged PRs in 30d

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67 open issues indexed

set_context function Open

ContextLab/supereeg#3 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
tensorflow backend Open

ContextLab/supereeg#4 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
preprocess module? Open

ContextLab/supereeg#7 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Optimize code for reconstructing timesamples Open

ContextLab/supereeg#9 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
reduce memory load with quantization Open

ContextLab/supereeg#10 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
generate new model including RAM dataset Open

ContextLab/supereeg#12 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
plot functions Open

ContextLab/supereeg#13 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
"real time" predict function Open

ContextLab/supereeg#15 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
take advantage of GPUs on discovery Open

ContextLab/supereeg#16 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Ideas from ECoG journal club: model improvements Open

ContextLab/supereeg#21 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
bad electrode questions: Open

ContextLab/supereeg#22 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
optimal electrode placement based on ROI Open

ContextLab/supereeg#23 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
appropriate radius in new 20K locations Open

ContextLab/supereeg#25 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Sanity checks with Uri Hasson's fMRI data Open

ContextLab/supereeg#26 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
remap function Open

ContextLab/supereeg#30 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
predict best locations Open

ContextLab/supereeg#31 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
suuport BIDS data format Open

ContextLab/supereeg#41 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
se.save function Open

ContextLab/supereeg#42 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
refactor loading/saving of nifti files Open

ContextLab/supereeg#43 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Simulated dataset that we can reconstruct perfectly Open

ContextLab/supereeg#46 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
distance metrics for averaging correlation matrices Open

ContextLab/supereeg#47 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
use resting state connectivity matrix for model Open

ContextLab/supereeg#54 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
write tests for plot function Open

ContextLab/supereeg#61 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
plots for brain Open

ContextLab/supereeg#72 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
gallery of examples order Open

ContextLab/supereeg#76 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Fancier brain plots using ipyvolume Open

ContextLab/supereeg#94 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Model masking (future release) Open

ContextLab/supereeg#105 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
support toolbox on windows Open

ContextLab/supereeg#108 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add resample as nifti method Open

ContextLab/supereeg#115 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
possible change: remove thresholding from brain objects Open

discussion help wanted question

ContextLab/supereeg#119 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
refactor "three cases" for `model.predict` Open

ContextLab/supereeg#124 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
make sure garbage collection has been run Open

ContextLab/supereeg#127 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
subclass parameters Open

ContextLab/supereeg#131 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
BUG: plot_locs and plot_data when no electrodes pass the filter threshold Open

ContextLab/supereeg#134 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
BUG: kurtosis values incorrect after Brain.resample Open

ContextLab/supereeg#135 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
return standard error of estimates Open

ContextLab/supereeg#147 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
API ideas brainstorm Open

ContextLab/supereeg#152 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Locations class Open

ContextLab/supereeg#153 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Brain.set_locs() Open

ContextLab/supereeg#154 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
implement a __contains__ method in model/brain object Open

ContextLab/supereeg#155 · 4 comments · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Change save format to npz from h5py Open

ContextLab/supereeg#156 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add test for radius Open

ContextLab/supereeg#160 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
validation analyses Open

ContextLab/supereeg#161 · 4 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
better tests Open

ContextLab/supereeg#162 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
apply supereeg to RAM stimulation data Open

ContextLab/supereeg#163 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
grid electrode consideration Open

ContextLab/supereeg#164 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
n_subs overwritten in model init Open

ContextLab/supereeg#165 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Python 3.7 Open

ContextLab/supereeg#167 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
conda package Open

ContextLab/supereeg#168 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
division in recover_model Open

ContextLab/supereeg#173 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

ContextLab/supereeg

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