CDCgov/seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

Beginner friendly Everything

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8 open issues indexed

[FEATURE REQUEST] Add Biosample for Genebank Submission Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 64/100

CDCgov/seqsender#138 · Opened Jun 9, 2026
[FEATURE REQUEST] Norovirus Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 50/100

CDCgov/seqsender#137 · Opened Apr 27, 2026
[FEATURE REQUEST] test submissions to all three databases Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 30/100

CDCgov/seqsender#120 · Opened Aug 7, 2025
[BUG] Inconsistent capitalization in metadata files and schema Open

bug

CDCgov/seqsender#112 · 5 comments · 1 assignee · Opened Feb 26, 2025
Check on why GenBank record page does not always show links to Biosample/Bioproject/(SRA?). Open

CDCgov/seqsender#94 · 7 comments · 1 assignee · Opened Nov 14, 2024
[FEATURE REQUEST] Add ID-style structure comments to GenBank Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

CDCgov/seqsender#92 · Opened Oct 10, 2024
[FEATURE REQUEST] Add NCBI databases TSA and WGS Open

enhancement nice-to-have

Difficulty 5/5 Over a week Newbie friendliness 25/100

CDCgov/seqsender#91 · Opened Oct 3, 2024
[FEATURE REQUEST] Adding Pathoplexus to the options Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

CDCgov/seqsender#88 · Opened Sep 27, 2024

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