[FEATURE REQUEST] Add NCBI databases TSA and WGS
Open
Nobody has claimed this yet.
enhancement
nice-to-have
- Dominant language
- Python
- Stars
- 2
- Forks
- 0
- Avg merge
- 20m
- Merged PRs (30d)
- 5
Description
Is this feature for general SeqSender usage or for submitting to a specific database, if so what database?
NCBI databases:
Transcriptome Shotgun Assembly Sequence Database
Whole Genome Shotgun Submissions
Describe the solution you'd like
NCBI already supports these via xml to FTP and should be able to be easily integrated into SeqSender
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review SeqSender's existing submission flow and determine how NCBI database integrations are represented. Use the issue's TSA and WGS requirements, including XML-to-FTP submission, to define the integration scope and completion criteria for both databases.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- backend, data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100