AllenNeuralDynamics/biodata-schema

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Complete and accurate metadata for neuroscience

Stars: 0
Forks: 0
Open beginner issues: 0
Indexed issues: 59

Dominant language: Python
License: MIT
Last GitHub push: Aug 20, 2026
Latest indexed: Sep 13, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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59 open issues indexed

Lists vs Dictionaries when using `List[Model]` Open

question

AllenNeuralDynamics/biodata-schema#57 · 13 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Keep a compatibility table for between `schema` and `schema-models` Open

documentation

AllenNeuralDynamics/biodata-schema#56 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add Stimulus Epochs to session examples Open

documentation

AllenNeuralDynamics/biodata-schema#55 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add slice physiology class to session schema Open

AllenNeuralDynamics/biodata-schema#54 · 3 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
Support patch seq experiments in schema Open

AllenNeuralDynamics/biodata-schema#53 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Perfusion Open

AllenNeuralDynamics/biodata-schema#52 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Revisit photostim class Open

AllenNeuralDynamics/biodata-schema#51 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
[2.0] AIND-specific aind-data-schema CO tutorial Open

AllenNeuralDynamics/biodata-schema#50 · 3 comments · 0 reactions · 3 assignees · Indexed Sep 13, 2026
Support multi-subject data Open

AllenNeuralDynamics/biodata-schema#49 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Doc: How do I get alerts on the status of my data Open

documentation

AllenNeuralDynamics/biodata-schema#48 · 10 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Support for multi-key calibrations Open

AllenNeuralDynamics/biodata-schema#47 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Consider aligning the name of scoped properties Open

AllenNeuralDynamics/biodata-schema#46 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Consider adding additonal information from harp-tech whoami device list to generated models Open

AllenNeuralDynamics/biodata-schema#45 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Commit linter changes automatically when merging PRs Open

AllenNeuralDynamics/biodata-schema#44 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Replace protocol strings with ProtocolModel Open

AllenNeuralDynamics/biodata-schema#43 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Enforce subject_id validation across files Open

AllenNeuralDynamics/biodata-schema#42 · 2 comments · 1 reaction · 1 assignee · Indexed Sep 13, 2026
tweaks for Processing example in docs Open

documentation

AllenNeuralDynamics/biodata-schema#41 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Rename "suffix" to "extension" in write_standard_file Open

AllenNeuralDynamics/biodata-schema#40 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
resolve confusing state of Processing schema Open

AllenNeuralDynamics/biodata-schema#39 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Curation.json Open

AllenNeuralDynamics/biodata-schema#38 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Validate modality between acquisition data streams and data_description.modalities Open

AllenNeuralDynamics/biodata-schema#37 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
restrictions in MouseSubject should be upleveled to the Subject class Open

AllenNeuralDynamics/biodata-schema#36 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
add behavior videos to check modality config Open

AllenNeuralDynamics/biodata-schema#35 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Update aind-data-schema dev environment to use uv instead of virtual environments Open

AllenNeuralDynamics/biodata-schema#34 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
[v3] Separate device configurations from device properties Open

AllenNeuralDynamics/biodata-schema#33 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
[v3] Optional -> required fields Open

AllenNeuralDynamics/biodata-schema#32 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add sectioning.md page with some images describing how to use Sectioning/PlanarSectioning Open

AllenNeuralDynamics/biodata-schema#31 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
icephys - config for assembly Open

AllenNeuralDynamics/biodata-schema#30 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add behavior-only instrument and acquisition examples to /examples Open

AllenNeuralDynamics/biodata-schema#29 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Remove TriggerType from Detectors Open

AllenNeuralDynamics/biodata-schema#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
files.json Open

AllenNeuralDynamics/biodata-schema#27 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Clean up test runner warnings Open

AllenNeuralDynamics/biodata-schema#26 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
How to track batches of experiments while affording multi-dimensional asset grouping Open

AllenNeuralDynamics/biodata-schema#25 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Develop class/vocabulary for restrictions Open

AllenNeuralDynamics/biodata-schema#24 · 0 comments · 0 reactions · 3 assignees · Indexed Sep 13, 2026
Developmental stage Open

AllenNeuralDynamics/biodata-schema#23 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
create_metadata_json should pull the name from the data_description Open

AllenNeuralDynamics/biodata-schema#22 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
change DataProcess.output_file to allow multiple Open

AllenNeuralDynamics/biodata-schema#21 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Move perfusion or add a "terminal_procedure_details" section Open

AllenNeuralDynamics/biodata-schema#20 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Enable cross-platform testing in the test matrix Open

AllenNeuralDynamics/biodata-schema#19 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
CameraAssembly doesn't support two lens in a macro coupler for ISI Instrument Open

AllenNeuralDynamics/biodata-schema#18 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Consider requiring intended_measurement in Channel Open

AllenNeuralDynamics/biodata-schema#17 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Accelerometer placement Open

AllenNeuralDynamics/biodata-schema#16 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Lens implant Open

AllenNeuralDynamics/biodata-schema#15 · 1 comment · 0 reactions · 2 assignees · Indexed Sep 13, 2026
config for 1p imaging Open

AllenNeuralDynamics/biodata-schema#14 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
add data_description field to flag non-AIND data Open

AllenNeuralDynamics/biodata-schema#13 · 4 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
rename or clarify docstrings on DataDescription.from_xxx methods Open

AllenNeuralDynamics/biodata-schema#12 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
deduplication when combining processing/QC records Open

AllenNeuralDynamics/biodata-schema#11 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Unnecessary warning about name fields in CoordinatSystem, Software, etc Open

AllenNeuralDynamics/biodata-schema#9 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Invalid name survives the derived data name regex Open

AllenNeuralDynamics/biodata-schema#7 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Intended_depth / Operational_depth Open

AllenNeuralDynamics/biodata-schema#6 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

AllenNeuralDynamics/biodata-schema

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