AllenNeuralDynamics / AllenNeuralDynamics/Aind.Behavior.DynamicForaging

Bias computation does not match v1 bias computation

Offen
#134 0 Kommentare 0 Reaktionen 1 zugewiesene Person Beansprucht von @micahwoodard Auf GitHub ansehen
Vorherrschende Sprache
C#
Sterne
0
Forks
0
Ø Merge
1 T. 22 Std.
Gemergte PRs (30 T.)
21

Beschreibung

The bias computation is deterministic, so it should match exactly, but it does not. Its very close, and is likely simply a difference in parameters, but its worth understanding why its not exact in case there is a deeper misunderstanding

In the following plot, I'm plotting the bias computed by the refactor acquisition code, as well as bias computed post-hoc by our analysis tools. The analysis tool computation matches exactly with how the v1 implementation acquisition code computed bias.

- Note the v1 version computes the bias every 10 trials and then backfills. So what we are looking for is the right-side of each v1 value to match the refactor bias, but it does not match.
- key parameters:
- n_trials_back = 5
- max_window = 200
- cv = 1
- compute_every = 10 # this is 1 for the refactor, and that should be fine

Image

Beitragsleitfaden

Für dieses Repository ist kein Beitragsleitfaden indexiert

Bewertung

Dieses Issue wurde noch nicht bewertet.

Neue Issues direkt in Ihr Postfach

Eine kurze Übersicht über anfängerfreundliche GitHub-Issues.