Owner
AllenCell
20 indexed repositories · View on GitHub
-
vole-core
core rendering canvas and data loading services for Vol-E volume viewer
TypeScript · 106 stars
-
agave
High quality visualization for volumetric image data
C++ · 62 stars
-
Python · 32 stars
-
Python · 32 stars
-
aics-segmentation
Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
Jupyter Notebook · 26 stars
-
cvapipe_analysis
Analysis of data produced by cvapipe for the variance paper
Jupyter Notebook · 24 stars
-
Python · 24 stars
-
napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
Python · 20 stars
-
segmenter_model_zoo
scripts and API for running Deep Learning models from segmenter
Jupyter Notebook · 10 stars
-
Python · 7 stars
-
benchmarking_representations
Benchmarking different methods for extracting unsupervised representations from images
Python · 7 stars
-
allencell-segmenter-ml
Napari plugin for ml segmentation
Python · 5 stars
-
endothelial-pipeline
Dynamics of ML-based morphological features indicate a shear stress-dependent bifurcation of hiPSC-derived endothelial cell states
Python · 2 stars
-
cell-feature-explorer
Plot and explore data that is linked to images, with an embedded viewer
TypeScript · 2 stars
-
EMT_data_analysis
This repo contains code for EMT deliverable data analysis and has dependencies associated with output from EMT_image_analysis repo.
Python · 1 star
-
Python · 0 stars
-
camera-alignment-core
Core algorithms for alignment of two-camera microscopy imagery
Python · 0 stars
-
cellpack-client
Frontend interface for cellPACK
TypeScript · 0 stars
-
cell-catalog
Cell catalog 2.0
TypeScript · 0 stars
-
TypeScript · 0 stars
-
Refactor pass 1 Openengine enhancement segmenter UI
AllenCell/napari-allencell-segmenter#68 · 0 comments · 0 reactions · 0 assignees ·
-
engine enhancement
AllenCell/napari-allencell-segmenter#100 · 0 comments · 0 reactions · 1 assignee ·
-
engine enhancement needs grooming UI
AllenCell/napari-allencell-segmenter#106 · 0 comments · 0 reactions · 0 assignees ·
-
bug
AllenCell/napari-allencell-segmenter#124 · 0 comments · 0 reactions · 0 assignees ·
-
Custom workflows Openengine enhancement needs grooming segmenter UI
AllenCell/napari-allencell-segmenter#127 · 3 comments · 0 reactions · 1 assignee ·
-
engine enhancement
AllenCell/napari-allencell-segmenter#132 · 1 comment · 0 reactions · 1 assignee ·
-
AllenCell/napari-allencell-segmenter#144 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/napari-allencell-segmenter#154 · 1 comment · 0 reactions · 0 assignees ·
-
AllenCell/napari-allencell-segmenter#155 · 1 comment · 0 reactions · 0 assignees ·
-
bug
AllenCell/napari-allencell-segmenter#156 · 6 comments · 0 reactions · 1 assignee ·
-
bug
AllenCell/napari-allencell-segmenter#157 · 2 comments · 0 reactions · 0 assignees ·
-
AllenCell/napari-allencell-segmenter#160 · 0 comments · 0 reactions · 0 assignees ·
-
Pytests do not run Open
AllenCell/napari-allencell-segmenter#161 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/napari-allencell-segmenter#162 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/napari-allencell-segmenter#163 · 1 comment · 0 reactions · 0 assignees ·
-
bug
AllenCell/napari-allencell-segmenter#165 · 0 comments · 0 reactions · 0 assignees ·
-
bug
AllenCell/napari-allencell-segmenter#166 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/nuc-morph-analysis#64 · 1 comment · 0 reactions · 0 assignees ·
-
AllenCell/camera-alignment-core#22 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/camera-alignment-core#24 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/camera-alignment-core#30 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/camera-alignment-core#34 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/camera-alignment-core#36 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/EMT_data_analysis#29 · 3 comments · 0 reactions · 1 assignee ·
-
AllenCell/EMT_data_analysis#37 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/EMT_data_analysis#38 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/EMT_data_analysis#39 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/EMT_data_analysis#40 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/EMT_data_analysis#41 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/cyto-dl#173 · 2 comments · 0 reactions · 1 assignee ·
-
AllenCell/cyto-dl#176 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/cyto-dl#225 · 0 comments · 0 reactions · 1 assignee ·
-
AllenCell/cyto-dl#374 · 15 comments · 0 reactions · 0 assignees ·
-
AllenCell/cyto-dl#379 · 1 comment · 0 reactions · 0 assignees ·
-
AllenCell/cyto-dl#419 · 3 comments · 0 reactions · 0 assignees ·
-
AllenCell/cyto-dl#422 · 1 comment · 0 reactions · 0 assignees ·
-
Add DiffAE to tests Open
AllenCell/cyto-dl#466 · 0 comments · 0 reactions · 0 assignees ·
-
AllenCell/cyto-dl#474 · 0 comments · 0 reactions · 0 assignees ·
-
Upgrade Pytorch Open
AllenCell/cyto-dl#495 · 1 comment · 0 reactions · 0 assignees ·
-
AllenCell/cyto-dl#507 · 4 comments · 0 reactions · 5 assignees ·
-
AllenCell/cell-feature-explorer#107 · 1 comment · 1 reaction · 0 assignees ·
-
good first issue
AllenCell/cell-feature-explorer#110 · 1 comment · 0 reactions · 0 assignees ·
-
bug
AllenCell/cell-feature-explorer#114 · 1 comment · 0 reactions · 0 assignees ·
-
enhancement ux
AllenCell/cell-feature-explorer#124 · 2 comments · 0 reactions · 0 assignees ·
-
AllenCell/cell-feature-explorer#125 · 1 comment · 0 reactions · 0 assignees ·
-
AllenCell/cell-feature-explorer#126 · 3 comments · 0 reactions · 1 assignee ·
-
AllenCell/cell-feature-explorer#134 · 0 comments · 0 reactions · 0 assignees ·
-
ux
AllenCell/cell-feature-explorer#135 · 4 comments · 0 reactions · 0 assignees ·
-
Tech debt
AllenCell/cell-feature-explorer#139 · 0 comments · 0 reactions · 0 assignees ·
-
Enable Zarr download Openux
AllenCell/cell-feature-explorer#141 · 1 comment · 0 reactions · 2 assignees ·