wikipathways/wikipathways-database

WikiPathways Database

Stars: 19
Forks: 27
Open beginner issues: 0
Indexed issues: 17
Avg merge: 21h 46m
Merged PRs (30d): 6

Dominant language: Shell
License: CC0-1.0
Last GitHub push: Sep 19, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted

Beginner friendly Everything

Open All

17 open issues indexed

"on pull request" not robust enough Open

bug

wikipathways/wikipathways-database#117 · 2 assignees · Opened Sep 7, 2026
add EFSA funding to AOP Portal Open

wikipathways/wikipathways-database#103 · 1 assignee · Opened Aug 23, 2026
Disease ontology term not converted correctly from gpml to md Open

bug

wikipathways/wikipathways-database#70 · 1 comment · 1 assignee · Opened Dec 13, 2025
License info is missing Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wikipathways/wikipathways-database#62 · Opened Aug 11, 2024
SARS-CoV-2 protein identifiers not loaded and mappings not available in the assets Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

wikipathways/wikipathways-database#59 · Opened May 23, 2024
WP2804 contains SBGN notation which breaks the build process Open

help wanted

wikipathways/wikipathways-database#58 · 1 assignee · Opened Mar 17, 2024
Use the GitHub discussion actions to automatically post daily GPML sync reports as discussion comments Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

wikipathways/wikipathways-database#56 · 1 comment · Opened Mar 15, 2024
Another way to check for community pathways not yet approved Open

documentation

wikipathways/wikipathways-database#53 · 1 comment · 1 assignee · Opened Jan 23, 2024
generate-references fails to log error with incorrect PubMed ID Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

wikipathways/wikipathways-database#50 · 1 comment · Opened Nov 8, 2023
update needed for fetching the right BridgeDb Derby files Open

wikipathways/wikipathways-database#47 · 1 assignee · Opened Aug 8, 2023
GitHub Actions for MMT (Metabolite version of GMT) Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

wikipathways/wikipathways-database#44 · 4 comments · Opened Jun 28, 2023
only download these two files once, instead of for each species again Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

wikipathways/wikipathways-database#39 · Opened May 6, 2023
Wikidata identifiers are missing in tsv files for genes Open

enhancement

wikipathways/wikipathways-database#38 · 1 comment · 1 assignee · Opened May 4, 2023
too many hardcoded Ensembl versions in the actions Open

bug

wikipathways/wikipathways-database#29 · 1 comment · 1 assignee · Opened Mar 12, 2023
Richer metadata for pathways Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

wikipathways/wikipathways-database#24 · Opened Feb 11, 2023
GPMLs that break json-svg conversion Open

bug

wikipathways/wikipathways-database#12 · 8 comments · 2 assignees · Opened Dec 12, 2022
Possible missing PMIDs in WP0-refs.tsv Open

bug

wikipathways/wikipathways-database#2 · 3 comments · 2 assignees · Opened Jan 15, 2022

A short digest of beginner-friendly GitHub issues.