wikipathways / wikipathways/wikipathways-database

only download these two files once, instead of for each species again

Open
#39 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Shell
Stars
19
Forks
27
Avg merge
21h 46m
Merged PRs (30d)
6

Description

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Open scripts/meta-data-action/configGenerator.sh at lines 9-10 and inspect how the two files are downloaded relative to the species processing. Confirm the desired behavior by tracing the script flow; done means each file is downloaded once rather than once per species.

Written by the indexing model from the issue text.

Assessment

Tech stack
shell
Domain
bioinformatics
Issue type
Refactor
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Clearly specified
Newbie friendliness
45/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.