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snakemake

14 indexed repositories · View on GitHub

• snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Python · 2877 stars

• snakemake-wrappers

  This is the development home of the Snakemake wrapper repository, see

  Python · 255 stars

• snakefmt

  The uncompromising Snakemake code formatter

  Python · 196 stars

• snakemake-executor-plugin-slurm

  A Snakemake executor plugin for submitting jobs to a SLURM cluster

  Python · 55 stars

• snakemake-workflow-catalog

  A statically generated catalog of available Snakemake workflows

  Python · 37 stars

• snakemake-executor-plugin-aws-batch

  A Snakemake executor plugin for AWS Batch

  Python · 12 stars

• snakemake-report-plugin-rocrate

  Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow

  Python · 2 stars

• snakemake-software-deployment-plugin-conda

  A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

  Python · 2 stars

• snakemake-infrastructure-profiles

  The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster...

  Shell · 1 star

• snakemake-executor-plugin-slurm-jobstep

  A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

  Python · 1 star

• snakemake-software-deployment-plugin-envmodules

  Snakemake software deployment plugin for environment modules

  Python · 0 stars

• snakemake-interface-common

  Common functions and classes for Snakemake and its plugins

  Python · 0 stars

• snakemake-hpc-teaching-material

  TeX · 0 stars

• snakemake-interface-software-deployment-plugins

  A stable interface for Snakemake software deployment plugins

  Python · 0 stars