snakemake/snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

Stars: 255
Forks: 215
Open beginner issues: 0
Indexed issues: 5
Avg merge: 16h 59m
Merged PRs (30d): 63

Dominant language: Python
License: No license data
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

5 open issues indexed

`bio/salmon/index` (and `bio/salmon/quant`) example declares `index.tct`/`index.tdct` as unconditional outputs, but Salmon only creates them for small references Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 70/100

snakemake/snakemake-wrappers#5543 · 2 comments · Opened Jul 15, 2026
snamemake-wrappers, multiqc requires setutools<81 Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 52/100

snakemake/snakemake-wrappers#5283 · 1 comment · Opened May 5, 2026
Feat: Adding Wrapper(s) for Gnomad Resources Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

snakemake/snakemake-wrappers#4921 · 6 comments · Opened Jan 28, 2026
Wrapper download fails due to incorrect GitHub path: mismatch between requested and actual wrapper URL Open

bug Stale

Difficulty 4/5 3-5 days Newbie friendliness 45/100

snakemake/snakemake-wrappers#4046 · 3 comments · Opened Apr 30, 2025
adding a cff file for citing the project Open

enhancement question

Difficulty 3/5 1-2 days Newbie friendliness 32/100

snakemake/snakemake-wrappers#2935 · 6 comments · 1 reaction · Opened May 13, 2024

A short digest of beginner-friendly GitHub issues.