Owner

sdsc-ordes

9 indexed repositories · View on GitHub

gimie
Extract linked metadata from repositories

Python · 16 stars
repository-template
Applies best practices for OSS repositories for Gitlab and Github

Nix · 5 stars
tripsu
Pseudonymize specific triples in a knowledge graph, with speed and accuracy. :ninja:

Rust · 4 stars
modos-api
Python API to manage multi-omics digital objects

Python · 2 stars
technical-presentation
Technical presentations with Reveal.js and tooling to produce PDF/HTML output

Shell · 2 stars
imaging-plaza
This repository contains an script and docker-compose.yml able to deploy and run all the services needed for an imaging plaza cold start.

0 stars
deid-module
Text deidentification module.

Python · 0 stars
mava-exchange
An exchange format for video annotations.

Python · 0 stars
modos-rs
Component based support repository for Modos

Nix · 0 stars

Beginner friendly Everything

Open All

fix: justfile to pick up broken turtle Open

Difficulty 2/5 1-3 hours Newbie friendliness 76/100

sdsc-ordes/mava-exchange#39 · Opened Sep 16, 2026
feat: implement a Security Token Service test over rustfs Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

sdsc-ordes/modos-rs#6 · Opened Aug 11, 2026
[Feature request]: decrypt-on-stream support Open

enhancement good first issue

sdsc-ordes/modos-api#216 · 2 assignees · Opened Jul 17, 2026
Regenerating examples Open

sdsc-ordes/mava-exchange#36 · 1 assignee · Opened Jul 16, 2026
Replace uv audit with trivy Open

enhancement

sdsc-ordes/mava-exchange#35 · 1 assignee · Opened Jul 16, 2026
Question to legal /TIBAVA Open

question

Difficulty 5/5 Over a week Newbie friendliness 25/100

sdsc-ordes/mava-exchange#34 · Opened Jul 1, 2026
Example: "Silent Love" from TIBAVA Open

question

Difficulty 3/5 1-2 days Newbie friendliness 45/100

sdsc-ordes/mava-exchange#33 · Opened Jul 1, 2026
Feature: new track type Observation List Series Open

feature question

sdsc-ordes/mava-exchange#29 · 1 comment · 1 assignee · Opened Jun 15, 2026
Setup of TIBAVA on Cloud Infra Open

sdsc-ordes/mava-exchange#28 · 1 assignee · Opened Jun 15, 2026
Feature: allow clustering Open

feature

sdsc-ordes/mava-exchange#27 · 1 assignee · Opened Jun 15, 2026
Idempotency Test for export and reimport Open

test

Difficulty 4/5 3-5 days Newbie friendliness 45/100

sdsc-ordes/mava-exchange#24 · Opened Jun 15, 2026
refactor(surrogate): builder interface for SurrogateMap Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

sdsc-ordes/deid-module#13 · Opened May 29, 2026
cff parser loads cff twice Open

sdsc-ordes/gimie#134 · 1 assignee · Opened May 28, 2026
Register tracks for export Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

sdsc-ordes/mava-exchange#9 · Opened Feb 23, 2026
[Bug]: kms does not restrict prefix-level access Open

bug

sdsc-ordes/modos-api#201 · 2 assignees · Opened Jan 19, 2026
feat: multiple replicas to deploy Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

sdsc-ordes/deid-module#4 · 1 comment · Opened Oct 24, 2025
feat: add `just update` for updating a template with given answers on existin repo Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

sdsc-ordes/repository-template#14 · Opened Aug 27, 2025
[Feature request]: Automate version updates Open

ci/cd

sdsc-ordes/modos-api#149 · 2 assignees · Opened Jun 16, 2025
feat: add nothing-but-nix Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

sdsc-ordes/repository-template#9 · Opened May 27, 2025
[Feature request]: Simulate new install in ci Open

ci/cd good first issue

sdsc-ordes/modos-api#142 · 2 assignees · Opened May 26, 2025
[Bug]: cannot decrypt when using an ssh-ed2551 key Open

bug

sdsc-ordes/modos-api#141 · 2 assignees · Opened May 23, 2025
feat: multiple rdf inputs Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

sdsc-ordes/tripsu#71 · 1 comment · Opened May 20, 2025
The != symbol was rendered in code block in latex format Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

sdsc-ordes/technical-presentation#16 · Opened May 16, 2025
Compare the tooling with python Open

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

sdsc-ordes/technical-presentation#15 · Opened May 16, 2025
Switch to memory leak eample? Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

sdsc-ordes/technical-presentation#12 · Opened May 16, 2025
Some thoughts about this example Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

sdsc-ordes/technical-presentation#11 · Opened May 16, 2025
Shorten the list make it fit more for beginner? Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

sdsc-ordes/technical-presentation#9 · Opened May 16, 2025
docs: space for examples, tutorial and use-cases Open

documentation

Difficulty 4/5 3-5 days Newbie friendliness 35/100

sdsc-ordes/tripsu#65 · 1 comment · Opened May 6, 2025
feat: add devbox dev. env. setup along side the devenv.sh Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

sdsc-ordes/repository-template#4 · Opened Mar 19, 2025
[Feature request]: automatically handle ReferenceGenome objects via refget Open

enhancement

sdsc-ordes/modos-api#120 · 1 comment · 1 assignee · Opened Mar 10, 2025
[Feature request]: metabolomics integration Open

enhancement

sdsc-ordes/modos-api#115 · 4 comments · 2 assignees · Opened Dec 4, 2024
perf(index): hash-based type lookup Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 45/100

sdsc-ordes/tripsu#58 · Opened Aug 26, 2024
Cancelling software addition -> website does not react Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

sdsc-ordes/imaging-plaza#2 · Opened Aug 21, 2024
feat: allow specifying a base-uri Open

Difficulty 4/5 3-5 days Newbie friendliness 28/100

sdsc-ordes/tripsu#52 · Opened Aug 13, 2024
feat: use URNs as outputs Open

enhancement good first issue

Difficulty 4/5 3-5 days Newbie friendliness 35/100

sdsc-ordes/tripsu#51 · 4 comments · Opened Aug 13, 2024
feat: configuration file support Open

good first issue

Difficulty 5/5 Over a week Newbie friendliness 25/100

sdsc-ordes/tripsu#45 · 1 comment · Opened Jul 26, 2024
burn image versions Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

sdsc-ordes/gimie#109 · 2 comments · Opened Jul 3, 2024
graphql error on some large repos Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

sdsc-ordes/gimie#106 · Opened Jan 9, 2024
Move code out of __init__ files Open

enhancement invalid

sdsc-ordes/gimie#102 · 2 assignees · Opened Nov 23, 2023
License (SPDX) maintenance strategy Open

enhancement

sdsc-ordes/gimie#101 · 1 comment · 2 assignees · Opened Nov 23, 2023
Optimize gimie container size Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

sdsc-ordes/gimie#95 · Opened Oct 20, 2023
Optimize Github Actions Open

enhancement

sdsc-ordes/gimie#94 · 1 comment · 1 reaction · 1 assignee · Opened Oct 20, 2023
Run on all user repositories Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 42/100

sdsc-ordes/gimie#61 · Opened Jun 29, 2023
[gimie] Handle repository versioning Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 48/100

sdsc-ordes/gimie#45 · Opened Apr 5, 2023
Python package parser Open

enhancement good first issue

Difficulty 3/5 1-2 days Newbie friendliness 35/100

sdsc-ordes/gimie#35 · Opened Feb 15, 2023

sdsc-ordes

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