[Android] GenerateAutolinkingNewArchitecturesFileTask still emits invalid add_subdirectory entries on 0.83.1 when JNI codegen dirs are missing

Description

Description

This still reproduces for me on React Native 0.83.1 with New Architecture enabled.

The generated Android-autolinking.cmake contains unconditional
add_subdirectory(...) entries for JNI/codegen directories under dependencies, e.g.

node_modules/<package>/android/build/generated/source/codegen/jni/

During ./gradlew clean, some of those directories do not exist, and CMake fails with:

add_subdirectory given source ".../jni/" which is not an existing directory

This prevents clean/build from completing.

A local fix is to update
GenerateAutolinkingNewArchitecturesFileTask.kt
so generated CMake:

• wraps add_subdirectory(...) with if(EXISTS ...)
• only appends the library to AUTOLINKED_LIBRARIES if that directory was actually added

Steps to reproduce

1. Enable New Architecture
2. Install dependencies
3. Run ./gradlew clean
4. Observe failure in generated Android-autolinking.cmake

React Native Version

0.83.1

Affected Platforms

Build - MacOS, Runtime - Android

Areas

Codegen, Other (please specify), TurboModule - The New Native Module System

Output of npx @react-native-community/cli info

info Fetching system and libraries information...
System:
  OS: macOS 26.2
  CPU: (10) arm64 Apple M4
  Memory: 301.59 MB / 16.00 GB
  Shell:
    version: "5.9"
    path: /bin/zsh
Binaries:
  Node:
    version: 20.19.4
    path: /Users/admin/.nvm/versions/node/v20.19.4/bin/node
  Yarn: Not Found
  npm:
    version: 10.8.2
    path: /Users/admin/.nvm/versions/node/v20.19.4/bin/npm
  Watchman:
    version: 2025.06.30.00
    path: /opt/homebrew/bin/watchman
Managers:
  CocoaPods:
    version: 1.16.2
    path: /Users/admin/.rvm/gems/ruby-3.1.0/bin/pod
SDKs:
  iOS SDK:
    Platforms:
      - DriverKit 25.4
      - iOS 26.4
      - macOS 26.4
      - tvOS 26.4
      - visionOS 26.4
      - watchOS 26.4
  Android SDK:
    API Levels:
      - "28"
      - "33"
      - "34"
      - "35"
      - "36"
    Build Tools:
      - 33.0.1
      - 34.0.0
      - 35.0.0
      - 36.0.0
    System Images:
      - android-33 | Google APIs ARM 64 v8a
      - android-34 | Google APIs ARM 64 v8a
      - android-34 | Google Play ARM 64 v8a
      - android-35 | Google Play ARM 64 v8a
    Android NDK: Not Found
IDEs:
  Android Studio: 2024.2 AI-242.23339.11.2421.12550806
  Xcode:
    version: 26.4/17E192
    path: /usr/bin/xcodebuild
Languages:
  Java:
    version: 17.0.13
    path: /usr/bin/javac
  Ruby:
    version: 3.1.0
    path: /Users/admin/.rvm/rubies/ruby-3.1.0/bin/ruby
npmPackages:
  "@react-native-community/cli":
    installed: 20.0.0
    wanted: 20.0.0
  react:
    installed: 19.2.0
    wanted: 19.2.0
  react-native:
    installed: 0.83.1
    wanted: 0.83.1
  react-native-macos: Not Found
npmGlobalPackages:
  "*react-native*": Not Found
Android:
  hermesEnabled: true
  newArchEnabled: true
iOS:
  hermesEnabled: true
  newArchEnabled: true

Stacktrace or Logs

> Task :app:externalNativeBuildCleanDebug FAILED
Clean react_codegen_rnreanimated-arm64-v8a, react_codegen_safeareacontext-arm64-v8a, appmodules-arm64-v8a, react_codegen_rnworklets-arm64-v8a
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:9 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/@d11/react-native-fast-image/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:10 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/@react-native-clipboard/clipboard/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:11 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/@react-native-community/netinfo/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:12 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-config/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:13 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-gesture-handler/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:14 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-nitro-modules/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:15 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-permissions/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:16 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-reanimated/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:18 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-share/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:19 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-webview/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:20 (add_subdirectory):
C/C++:   add_subdirectory given source
C/C++:   "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-worklets/android/build/generated/source/codegen/jni/"
C/C++:   which is not an existing directory.
C/C++: Call Stack (most recent call first):
C/C++:   /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
C/C++:   CMakeLists.txt:31 (include)
C/C++: CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:97 (target_link_libraries):
C/C++:   Cannot specify link libraries for target "react_codegen_RNFastImageSpec"
C/C++:   which is not built by this project.
C/C++: Call Stack (most recent call first):
C/C++:   CMakeLists.txt:31 (include)
C/C++: ninja: error: rebuilding 'build.ninja': subcommand failed

[Incubating] Problems report is available at: file:///Users/admin/Downloads/React-native-gradle-plugin-test/android/build/reports/problems/problems-report.html

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':app:externalNativeBuildCleanDebug'.
> com.android.ide.common.process.ProcessException: ninja: Entering directory `/Users/admin/Downloads/React-native-gradle-plugin-test/android/app/.cxx/Debug/2l3a356k/arm64-v8a'
  [0/2] Re-checking globbed directories...
  [1/2] Re-running CMake...
  -- Configuring incomplete, errors occurred!
  See also "/Users/admin/Downloads/React-native-gradle-plugin-test/android/app/.cxx/Debug/2l3a356k/arm64-v8a/CMakeFiles/CMakeOutput.log".
  See also "/Users/admin/Downloads/React-native-gradle-plugin-test/android/app/.cxx/Debug/2l3a356k/arm64-v8a/CMakeFiles/CMakeError.log".
  FAILED: build.ninja 
  /Users/admin/Library/Android/sdk/cmake/3.22.1/bin/cmake --regenerate-during-build -S/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/default-app-setup -B/Users/admin/Downloads/React-native-gradle-plugin-test/android/app/.cxx/Debug/2l3a356k/arm64-v8a
  
  C++ build system [clean] failed while executing:
      /Users/admin/Library/Android/sdk/cmake/3.22.1/bin/ninja \
        -C \
        /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/.cxx/Debug/2l3a356k/arm64-v8a \
        clean
    from /Users/admin/Downloads/React-native-gradle-plugin-test/android/app
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:9 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/@d11/react-native-fast-image/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:10 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/@react-native-clipboard/clipboard/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:11 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/@react-native-community/netinfo/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:12 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-config/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:13 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-gesture-handler/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:14 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-nitro-modules/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:15 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-permissions/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:16 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-reanimated/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:18 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-share/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:19 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-webview/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/android/app/build/generated/autolinking/src/main/jni/Android-autolinking.cmake:20 (add_subdirectory):
    add_subdirectory given source
    "/Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native-worklets/android/build/generated/source/codegen/jni/"
    which is not an existing directory.
  Call Stack (most recent call first):
    /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:94 (include)
    CMakeLists.txt:31 (include)
  
  
  CMake Error at /Users/admin/Downloads/React-native-gradle-plugin-test/node_modules/react-native/ReactAndroid/cmake-utils/ReactNative-application.cmake:97 (target_link_libraries):
    Cannot specify link libraries for target "react_codegen_RNFastImageSpec"
    which is not built by this project.
  Call Stack (most recent call first):
    CMakeLists.txt:31 (include)
  
  
  ninja: error: rebuilding 'build.ninja': subcommand failed

* Try:
> Run with --stacktrace option to get the stack trace.
> Run with --info or --debug option to get more log output.
> Run with --scan to generate a Build Scan (Powered by Develocity).
> Get more help at https://help.gradle.org.

Deprecated Gradle features were used in this build, making it incompatible with Gradle 10.

You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins.

For more on this, please refer to https://docs.gradle.org/9.0.0/userguide/command_line_interface.html#sec:command_line_warnings in the Gradle documentation.

BUILD FAILED in 4s

MANDATORY Reproducer

https://github.com/Sagniknewme09/React-native-gradle-plugin-test

Public reproducer repo:
https://github.com/Sagniknewme09/React-native-gradle-plugin-test

Repro steps:

1. npm install
2. cd android
3. ./gradlew clean

Observed:
Generated Android-autolinking.cmake contains unconditional add_subdirectory(...) entries for missing build/generated/source/codegen/jni directories, and clean fails.

Expected:
./gradlew clean should succeed even when those generated JNI directories do not exist yet.

Screenshots and Videos

No response

Bắt đầu trong GenerateAutolinkingNewArchitecturesFileTask.kt và kiểm tra cách nó phát sinh các entry trong Android-autolinking.cmake cho các thư mục JNI/codegen. Tái hiện bằng ./gradlew clean với New Architecture được bật; hoàn tất khi các thư mục bị thiếu không còn gây ra lỗi CMake add_subdirectory hoặc target_link_libraries, trong khi các thư mục hiện có vẫn được liên kết.