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openworm

7 indexed repositories · View on GitHub

OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

Python · 3062 stars
c302
The c302 framework for generating multiscale network models of C. elegans

Python · 156 stars
openworm_docs
Documentation for OpenWorm, i.e. docs.openworm.org

Python · 45 stars
openworm.github.io
OpenWorm main website

HTML · 30 stars
ConnectomeToolbox
Information on published connectomics data related to C. elegans

Python · 7 stars
WormWorx
C. elegans simulator

C · 7 stars
openworm.ai
Scripts related to use of LLMs and other AI technology in OpenWorm

HTML · 4 stars

Beginner friendly Everything

Open All

Add version of cect used to generate website in footer Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

openworm/ConnectomeToolbox#66 · Opened Jul 22, 2026
Update notebooks so Plotly graphs show when run in Binder Open

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

openworm/ConnectomeToolbox#64 · Opened Jun 12, 2026
Can we update AMD OpenCL drivers in the docker image? Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

openworm/OpenWorm#385 · 2 comments · Opened Apr 14, 2026
Add recent attendance at worm meetings to Events page Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

openworm/openworm.github.io#201 · Opened Feb 13, 2026
Using general RAG implementation Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/openworm.ai#44 · 3 comments · Opened Jan 21, 2026
Update to latest version of hiveplotlib Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

openworm/ConnectomeToolbox#50 · Opened Oct 9, 2025
Investigate: Measuring Massive Multitask Language Understanding Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/openworm.ai#8 · 1 comment · Opened Feb 17, 2025
Echo command in Dockerfile used to write aliases missing -e flag? Open

Difficulty 1/5 Under an hour Newbie friendliness 42/100

openworm/OpenWorm#361 · 2 comments · Opened Feb 2, 2025
Add tests for Readers which run via pytests Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

openworm/ConnectomeToolbox#38 · 4 comments · Opened Jan 24, 2025
Document lfs checkout from this repo Open

openworm/c302#76 · 1 assignee · Opened Jun 24, 2024
Update Events page with recent news & check formatting Open

beginner

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

openworm/openworm.github.io#187 · 3 comments · Opened May 31, 2024
Create JupyterLab based version of Dockerfile Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#347 · 2 comments · Opened May 22, 2024
Change "NeuroML C. elegans Connectome" on Science page to c302 Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

openworm/openworm.github.io#181 · Opened May 21, 2024
Deprecated dependencies: Use command line interface to create new network Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

openworm/c302#70 · 1 comment · Opened Feb 19, 2024
Possible memory leak - openworm 0.9.4 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/OpenWorm#341 · 1 comment · Opened Feb 4, 2024
Porting the computation of C302 neural network operations to my neural morphology chip. Open

openworm/c302#52 · 3 comments · 1 assignee · Opened Nov 27, 2023
Support for Python Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

openworm/WormWorx#2 · Opened Nov 17, 2023
The first time running version 0.9.3 of this project failed. Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

openworm/OpenWorm#336 · 6 comments · Opened Nov 15, 2023
Fix/replace Twitter/X feed on homepage Open

beginner

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/openworm.github.io#178 · 1 comment · Opened Nov 13, 2023
Output fails when running with duration higher than 2000 Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#332 · 10 comments · Opened Apr 25, 2023
Check links on Science page Open

Difficulty 2/5 1-3 hours Newbie friendliness 50/100

openworm/openworm.github.io#174 · Opened Dec 2, 2022
Corrupted video and data. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#330 · 3 comments · Opened Nov 16, 2022
Configuration file failed with Version 0.9.3 Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#329 · 6 comments · Opened Oct 24, 2022
Docker GPU support Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#320 · 2 comments · 1 reaction · Opened Mar 13, 2022
Pin versions in Dockerfile for releases Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

openworm/OpenWorm#317 · 1 comment · Opened Oct 12, 2021
Use a more efficient means for recording Sibernetic simulation video Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#315 · Opened Sep 11, 2021
Use virtualenv for Docker Python packages Open

openworm/OpenWorm#314 · 1 assignee · Opened Sep 7, 2021
List and dictionary command line arguments from README not executable in some shells Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

openworm/c302#36 · Opened Apr 14, 2021
Replace membership page with summary of current project organisation Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

openworm/openworm_docs#84 · Opened Apr 8, 2021
Create GSuite and GitHub account for automation Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#309 · 1 comment · Opened Mar 29, 2021
The openworm.org SSL certificate is valid for github.com, *.github.com, but not openworm.org. browser.openworm.org sends an empty reply over HTTPS. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#305 · 2 comments · Opened Oct 17, 2020
Use OpenWorm backers data source to get backers for c302 network generation. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/c302#28 · Opened Oct 2, 2020
repo graph Open

enhancement

openworm/openworm_docs#76 · 1 assignee · Opened Nov 27, 2019
Replace igraph usage with networkx in project graph builder Open

openworm/openworm_docs#74 · 1 assignee · Opened Nov 10, 2019
Update all .openworm.yml files Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/openworm_docs#70 · 2 reactions · Opened Nov 4, 2019
Add .openworm.yml metadata to geppetto repositories Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

openworm/openworm_docs#69 · 6 comments · Opened Nov 3, 2019
Update owmeta references and summaries Open

enhancement

openworm/openworm_docs#65 · 1 assignee · Opened Oct 28, 2019
automate subproject metadata parsing Open

openworm/openworm_docs#55 · 10 comments · 3 assignees · Opened Sep 16, 2019
Make updates to openworm_docs based on C. Volko's changes Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/openworm_docs#51 · 1 comment · Opened Apr 19, 2019
Incorporate ChannelWorm2 into Docker Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#288 · Opened Sep 2, 2018
Incorporate MyBinder.org configurations into 0.9 and get stack running on MyBinder.org Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#287 · Opened Aug 29, 2018
Clarify pipeline from ChannelWorm to c302 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/c302#14 · Opened Aug 21, 2018
Make a proper unit test suite Open

test quality

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/c302#9 · Opened Jun 25, 2018
Update documentation and code to run c302/c302_*.py as python -m c302.c302_* Open

documentation enhancement good first issue

Difficulty 3/5 1-2 days Newbie friendliness 45/100

openworm/c302#8 · 2 comments · Opened Jun 25, 2018
Embed Top-level project board in a prominent place Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

openworm/openworm_docs#48 · Opened Jun 20, 2018
Incorporate a DevoWorm related code demo into the simulation stack Open

openworm/OpenWorm#284 · 1 comment · 2 assignees · Opened May 11, 2018
Add ChannelWorm to main OpenWorm carousel Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

openworm/openworm.github.io#131 · Opened Apr 11, 2018
Pre-compile the c302 simulation Open

openworm/OpenWorm#273 · 1 reaction · 1 assignee · Opened Feb 12, 2018
Option to define which files to copy to the output directory Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

openworm/OpenWorm#270 · Opened Jan 7, 2018
Replace xvfb Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#268 · 1 comment · Opened Jan 5, 2018

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