openworm/OpenWorm

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Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

Stars: 3.1k
Forks: 244
Open beginner issues: 0
Indexed issues: 41

Dominant language: Python
License: MIT
Last GitHub push: Aug 4, 2026
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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41 open issues indexed

Can we update AMD OpenCL drivers in the docker image? Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

openworm/OpenWorm#385 · 2 comments · Opened Apr 14, 2026
Echo command in Dockerfile used to write aliases missing -e flag? Open

Difficulty 1/5 Under an hour Newbie friendliness 42/100

openworm/OpenWorm#361 · 2 comments · Opened Feb 2, 2025
Create JupyterLab based version of Dockerfile Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#347 · 2 comments · Opened May 22, 2024
Possible memory leak - openworm 0.9.4 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/OpenWorm#341 · 1 comment · Opened Feb 4, 2024
The first time running version 0.9.3 of this project failed. Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

openworm/OpenWorm#336 · 6 comments · Opened Nov 15, 2023
Output fails when running with duration higher than 2000 Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#332 · 10 comments · Opened Apr 25, 2023
Corrupted video and data. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#330 · 3 comments · Opened Nov 16, 2022
Configuration file failed with Version 0.9.3 Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#329 · 6 comments · Opened Oct 24, 2022
Docker GPU support Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#320 · 2 comments · 1 reaction · Opened Mar 13, 2022
Pin versions in Dockerfile for releases Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

openworm/OpenWorm#317 · 1 comment · Opened Oct 12, 2021
Use a more efficient means for recording Sibernetic simulation video Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#315 · Opened Sep 11, 2021
Use virtualenv for Docker Python packages Open

openworm/OpenWorm#314 · 1 assignee · Opened Sep 7, 2021
Create GSuite and GitHub account for automation Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#309 · 1 comment · Opened Mar 29, 2021
The openworm.org SSL certificate is valid for github.com, *.github.com, but not openworm.org. browser.openworm.org sends an empty reply over HTTPS. Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#305 · 2 comments · Opened Oct 17, 2020
Incorporate ChannelWorm2 into Docker Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#288 · Opened Sep 2, 2018
Incorporate MyBinder.org configurations into 0.9 and get stack running on MyBinder.org Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#287 · Opened Aug 29, 2018
Incorporate a DevoWorm related code demo into the simulation stack Open

openworm/OpenWorm#284 · 1 comment · 2 assignees · Opened May 11, 2018
Pre-compile the c302 simulation Open

openworm/OpenWorm#273 · 1 reaction · 1 assignee · Opened Feb 12, 2018
Option to define which files to copy to the output directory Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

openworm/OpenWorm#270 · Opened Jan 7, 2018
Replace xvfb Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#268 · 1 comment · Opened Jan 5, 2018
Plot connection matrix Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

openworm/OpenWorm#264 · Opened Jan 5, 2018
Enable GPU acceleration for Sibernetic running within stack Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#262 · 2 comments · Opened Jan 5, 2018
Incorporate running c302 "unit tests" and "integration tests" Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/OpenWorm#259 · Opened Jan 5, 2018
Simplify movie output Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

openworm/OpenWorm#255 · Opened Jan 5, 2018
Determine Ion Channel Default Lists for Muscle Cells and Key Neurons Open

openworm/OpenWorm#245 · 1 comment · 7 assignees · Opened Feb 14, 2017
Produce Channel C I/V curve comparison figure Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

openworm/OpenWorm#243 · Opened Feb 3, 2017
Produce Channel B I/V curve comparison figure Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/OpenWorm#242 · Opened Feb 3, 2017
Produce Channel A I/V curve comparison figure Open

ready

Difficulty 4/5 3-5 days Newbie friendliness 35/100

openworm/OpenWorm#241 · 1 comment · Opened Feb 3, 2017
Produce neuron electrophysiology figure C + compare to simulated match Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

openworm/OpenWorm#240 · Opened Feb 3, 2017
Produce neuron electrophysiology figure B + compare to simulated match Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

openworm/OpenWorm#239 · Opened Feb 3, 2017
Produce neuron electrophysiology figure A + compare to simulated match Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

openworm/OpenWorm#238 · Opened Feb 3, 2017
Produce muscle cell electrophysiology trace figure and compare with simulated match Open

in progress muscle model

openworm/OpenWorm#237 · 6 comments · 1 assignee · Opened Feb 3, 2017
Produce muscle force vs simulated match figure Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

openworm/OpenWorm#236 · Opened Feb 3, 2017
Produce biophysics parameter figure + simulated match Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#235 · Opened Feb 3, 2017
Produce key nervous system circuit figure + simulated match Open

in progress python research

openworm/OpenWorm#234 · 4 comments · 2 assignees · Opened Feb 3, 2017
Produce global nervous system activity figure + simulated match Open

ready

Difficulty 5/5 Over a week Newbie friendliness 25/100

openworm/OpenWorm#233 · 1 comment · Opened Feb 3, 2017
Produce Behavioral Figure D + simulated match Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

openworm/OpenWorm#232 · Opened Feb 3, 2017
Produce Behavioral Figure C + simulated match Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

openworm/OpenWorm#231 · Opened Feb 3, 2017
Produce Behavioral Figure B + simulated match Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

openworm/OpenWorm#230 · Opened Feb 3, 2017
Produce Behavioral Figure A + simulated match Open

in progress movement validation sibernetic

openworm/OpenWorm#229 · 21 comments · 1 reaction · 6 assignees · Opened Feb 3, 2017
Create alternate view of repos metadata Open

beginner html / javascript

Difficulty 3/5 1-2 days Newbie friendliness 45/100

openworm/OpenWorm#228 · 7 comments · Opened Nov 28, 2016

openworm/OpenWorm

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