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open-AIMS

16 indexed repositories · View on GitHub

ADRIA.jl
ADRIA: Adaptive Dynamic Reef Intervention Algorithms. A multi-criteria decision support platform for informing reef restoration and adapt...

Julia · 25 stars
ereefs
Useful functions to make accessing eReefs and other CSIRO-EMS output files easier in R.

Jupyter Notebook · 11 stars
CoralBlox.jl
CoralBlox is a coral growth and mortality ecological model, developed for decision support, that iterates over discretized distributions.

Julia · 5 stars
GBR-reef-guidance-assessment

Julia · 4 stars
ssddata
Species Sensitivity Distribution Data

R · 2 stars
toxval

R · 2 stars
SBE-CTD-AutoProc
Seabird data processing app

Python · 1 star
CoralBlox-params-calibration

Julia · 1 star
ReefMonitoring-DataClient
Extract data from reef-monitoring web tool.

Julia · 1 star
ReefGuide.jl
ReefGuide Julia library functions. Supports regional and suitability assessment operations. Currently utilised by the ReefGuideWorker.jl ...

Julia · 1 star
Kora.jl
A coral model based on population distributions for decision support

Julia · 1 star
coral_indices
Code in support of the AIMS lead Coral Indicator Project

R · 0 stars
reefscan_inference
Python program for inferencing a batch of images on a local PC

Python · 0 stars
reefscan_desktop_data_manager

Python · 0 stars
msPAF
This repository contains code to replicate the methods for adjusting water quality guideline values for additive stressors, as derscribed...

R · 0 stars
cr_modelling_training
The respository contains code and worked examples to demonstrate the estimation of no-effect toxicity estimates from concentration respon...

R · 0 stars

Beginner friendly Everything

Open All

Decide how draws with no crossing are aggregated (the mixed case) Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

open-AIMS/toxval#60 · Opened Sep 12, 2026
Add synthetic C~scape result set fixture and tests for the C~scape interface Open

maintenance tests

Difficulty 4/5 3-5 days Newbie friendliness 72/100

open-AIMS/ADRIA.jl#1184 · Opened Sep 8, 2026
`nsec.drc()` calls `xform(nsec_out)` and discards the result, so `xform` is never applied in the single-curve case Open

Difficulty 2/5 1-3 hours Newbie friendliness 85/100

open-AIMS/toxval#57 · Opened Sep 7, 2026
Update to improve error handling and messaging Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

open-AIMS/toxval#56 · Opened Sep 6, 2026
Validation of arguments needs to occur in generic instead of specific methods Open

Difficulty 3/5 1-2 days Newbie friendliness 62/100

open-AIMS/toxval#55 · 1 comment · Opened Sep 6, 2026
The `ecx_val` parameter is not being validated in `ecx.bnecfit()` so tests don't fail Open

Difficulty 3/5 1-2 days Newbie friendliness 70/100

open-AIMS/toxval#54 · 1 comment · Opened Sep 6, 2026
Fix typo in error message Open

bug

Difficulty 1/5 Under an hour Newbie friendliness 85/100

open-AIMS/toxval#53 · 2 comments · Opened Sep 6, 2026
Release v0.4.0 Open

Difficulty 1/5 Under an hour Newbie friendliness 25/100

open-AIMS/ReefGuide.jl#40 · 1 comment · Opened Sep 1, 2026
Clip Great_Barrier_Reef_Features.geojson to mainland/islands to shrink repo Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

open-AIMS/CoralBlox-params-calibration#29 · Opened Aug 31, 2026
Hoist hardcoded temporal range (1992:2025) into a shared const Open

Difficulty 1/5 Under an hour Newbie friendliness 90/100

open-AIMS/ReefMonitoring-DataClient#5 · Opened Aug 31, 2026
ecnsec is computed from three different definitions across the nsec methods Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

open-AIMS/toxval#49 · 4 comments · Opened Aug 28, 2026
livewire_mapping should be moved to the config directory Open

Difficulty 2/5 1-3 hours Newbie friendliness 65/100

open-AIMS/SBE-CTD-AutoProc#16 · 1 comment · Opened Aug 26, 2026
XML warnings Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

open-AIMS/SBE-CTD-AutoProc#15 · Opened Aug 25, 2026
Nutrient information tab Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 50/100

open-AIMS/SBE-CTD-AutoProc#11 · Opened Aug 25, 2026
Error label not showing or limited Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

open-AIMS/SBE-CTD-AutoProc#10 · Opened Aug 25, 2026
App wont process if duplicate columns exist. Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 55/100

open-AIMS/SBE-CTD-AutoProc#9 · Opened Aug 25, 2026
Clarification of dates in config files directory names in README.md Open

Difficulty 1/5 Under an hour Newbie friendliness 92/100

open-AIMS/SBE-CTD-AutoProc#8 · Opened Aug 25, 2026
SBE._sbe_cmd() should set an explicity name append string Open

Difficulty 3/5 1-2 days Newbie friendliness 66/100

open-AIMS/SBE-CTD-AutoProc#7 · Opened Aug 25, 2026
Fallback to request_latitude did not work in process_file()? Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

open-AIMS/SBE-CTD-AutoProc#6 · Opened Aug 25, 2026
Instruments with dual sensors not handled Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

open-AIMS/SBE-CTD-AutoProc#5 · 1 comment · Opened Aug 25, 2026
Make processing steps and psa files configurable in config.toml Open

Difficulty 3/5 1-2 days Newbie friendliness 74/100

open-AIMS/SBE-CTD-AutoProc#4 · Opened Aug 25, 2026
modify setup_processing_dir() to copy only psa/xmlcon files from config folder Open

Difficulty 2/5 1-3 hours Newbie friendliness 76/100

open-AIMS/SBE-CTD-AutoProc#3 · 1 comment · Opened Aug 25, 2026
setup_latitude_service() not initializing 'latitude_service' for database case Open

Difficulty 2/5 1-3 hours Newbie friendliness 84/100

open-AIMS/SBE-CTD-AutoProc#2 · Opened Aug 25, 2026
Review error management Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

open-AIMS/SBE-CTD-AutoProc#1 · Opened Aug 25, 2026
Scope CRAN readiness — prerequisite for the bayesnec dependency reversal (#39) Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

open-AIMS/toxval#45 · 1 comment · Opened Aug 19, 2026
Investigate scoring all local peaks/troughs per reef, not just the global one Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

open-AIMS/CoralBlox-params-calibration#27 · Opened Aug 19, 2026
Wire up unmapped-disturbance down-weighting in the calibration objective function Open

question

Difficulty 5/5 Over a week Newbie friendliness 30/100

open-AIMS/CoralBlox-params-calibration#26 · Opened Aug 19, 2026
nsec.drc intervals invert a pointwise confidence band, which is not a CI on x Open

bug

Difficulty 5/5 Over a week Newbie friendliness 42/100

open-AIMS/toxval#43 · 1 comment · Opened Aug 19, 2026
Add a hypothesis method for testing NEC/NSEC/ECx exceedance Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

open-AIMS/toxval#41 · Opened Aug 14, 2026
Replace the ecx/nsec evaluation grid with closed-form inversion or root-finding Open

Difficulty 5/5 Over a week Newbie friendliness 42/100

open-AIMS/toxval#40 · Opened Aug 14, 2026
Reverse the bayesnec dependency: toxval Imports bayesnec, and both register the same S3 methods Open

Difficulty 5/5 Over a week Newbie friendliness 42/100

open-AIMS/toxval#39 · 3 comments · Opened Aug 14, 2026
Yanagihara24 flag omits the element exclusion, so it over-selects (285/48 against their 268/42) Open

Difficulty 3/5 1-2 days Newbie friendliness 72/100

open-AIMS/ssddata#69 · 2 comments · Opened Aug 10, 2026
Extend the HCx co-dependence curve out to the axes Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 58/100

open-AIMS/msPAF#19 · Opened Aug 5, 2026
Support drc concentration-response models as a third input class Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 48/100

open-AIMS/msPAF#18 · Opened Aug 5, 2026
Add function to calculate each component's contribution to the msPAF Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

open-AIMS/msPAF#17 · Opened Aug 5, 2026
Propagate uncertainty through the additive functions Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

open-AIMS/msPAF#16 · Opened Aug 5, 2026
Tracking: test cases and validation material recoverable from scratch/ Open

help wanted

Difficulty 4/5 3-5 days Newbie friendliness 45/100

open-AIMS/msPAF#15 · Opened Aug 5, 2026
additive_hc() output for >2 stressors is hard to interpret and plot Open

question

Difficulty 3/5 1-2 days Newbie friendliness 65/100

open-AIMS/msPAF#14 · Opened Aug 5, 2026
hp_fun.bnecfit() rejects a single concentration; hp_fun.fitdists() does not Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 58/100

open-AIMS/msPAF#13 · Opened Aug 5, 2026
additive_hp(expand = FALSE) does not validate equal-length fixed_conc vectors Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 88/100

open-AIMS/msPAF#12 · Opened Aug 5, 2026
additive_hp() has no fixed_prop argument (asymmetric with additive_hc) Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 50/100

open-AIMS/msPAF#11 · 1 comment · Opened Aug 5, 2026
additive_hp() silently ignores unknown arguments via ... Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 68/100

open-AIMS/msPAF#10 · Opened Aug 5, 2026
bnecfit methods have no real test coverage Open

help wanted

Difficulty 4/5 3-5 days Newbie friendliness 55/100

open-AIMS/msPAF#9 · 2 comments · Opened Aug 5, 2026
Tracking: retire the six CHARACTERISATION tests once #1 is fixed Open

help wanted

Difficulty 4/5 3-5 days Newbie friendliness 42/100

open-AIMS/msPAF#8 · Opened Aug 5, 2026
additive_hc(): length(z) == 1 narrowed from > 0 — multi-crossing groups dropped silently Open

question

Difficulty 5/5 Over a week Newbie friendliness 42/100

open-AIMS/msPAF#7 · 1 comment · Opened Aug 5, 2026
Decide on commented-out round(proportion, 2) in hp_fun.bnecfit() Open

question

Difficulty 4/5 3-5 days Newbie friendliness 48/100

open-AIMS/msPAF#6 · 1 comment · Opened Aug 5, 2026
Resolve commented-out /100 in additive_hc() before fixing #1 (double-correction risk) Open

question

Difficulty 3/5 1-2 days Newbie friendliness 55/100

open-AIMS/msPAF#5 · Opened Aug 5, 2026
Dead if() in additive_hc() silently discards valid HC estimates Open

bug

Difficulty 2/5 Half a day Newbie friendliness 78/100

open-AIMS/msPAF#4 · 1 comment · Opened Aug 5, 2026
additive_hc(fixed_conc = ) aborts: `proportion` must have values between 0 and 1 Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 48/100

open-AIMS/msPAF#3 · 1 comment · Opened Aug 5, 2026
additive_hp() returns negative additive_proportions Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 68/100

open-AIMS/msPAF#2 · Opened Aug 5, 2026

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