nf-core/stableexpression

View on GitHub

This pipeline is designed to identify the most stable genes in one or more expression datasets (RNA-seq / Microarray). The ideal use case is for determining the most suitable RT-qPCR reference genes for a given species.

Stars: 9
Forks: 3
Open beginner issues: 0
Indexed issues: 4
Avg merge: 3d 5h
Merged PRs (30d): 3

Dominant language: Python
License: MIT
Last GitHub push: Sep 16, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

4 open issues indexed

Check species identifier with g:Profiler API beforehand Open

bug

nf-core/stableexpression#38 · 1 assignee · Opened Sep 16, 2026
Increase default allowed time for `IMPUTE_MISSING_VALUES` module Open

bug

nf-core/stableexpression#37 · 1 assignee · Opened Sep 16, 2026
Check adequacy of gene IDs between g:Profiler output and downloaded Ensembl annotation Open

bug

nf-core/stableexpression#36 · 1 assignee · Opened Sep 16, 2026
Check species name at the very beginning of the pipeline using the NCBI Datasets API Open

enhancement

nf-core/stableexpression#35 · 1 assignee · Opened Sep 16, 2026

nf-core/stableexpression

Get new issues in your inbox