nf-core/mspepid

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This pipeline performs the peptide identification of MS2 spectra from a proteomics experiment. For this, different search algorithm and rescoring approaches can be selected.

Stars: 3
Forks: 1
Open beginner issues: 0
Indexed issues: 3
Avg merge: 28m
Merged PRs (30d): 1

Dominant language: Nextflow
License: MIT
Last GitHub push: Sep 1, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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3 open issues indexed

prepare_spectra errors in stub mode because first() tries to get first item of empty directory Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/mspepid#17 · Opened Apr 17, 2026
test failed on THERMORAWFILEPARSER on profile docker,test using empty test files Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 30/100

nf-core/mspepid#14 · Opened Mar 16, 2026
Description / Introduction Text for Pipeline Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 25/100

nf-core/mspepid#8 · Opened Mar 13, 2026

nf-core/mspepid

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