test failed on THERMORAWFILEPARSER on profile docker,test using empty test files

Description of the bug

ubuntu@sven2:/mnt/data/projects/mspepid/mspepid-nfcore$ git branch
main

• tests

ubuntu@sven2:/mnt/data/projects/mspepid/mspepid-nfcore$ nextflow run main.nf -profile docker,test --input assets/samplesheet_empty.csv --outdir ./results

-[nf-core/mspepid] Pipeline completed with errors-
ERROR ~ Error executing process > 'NFCORE_MSPEPID:MSPEPID:PREPARE_SPECTRA:THERMORAWFILEPARSER (2-sample2)'

Caused by:
Process NFCORE_MSPEPID:MSPEPID:PREPARE_SPECTRA:THERMORAWFILEPARSER (2-sample2) terminated with an error exit status (1)

Command executed:

ThermoRawFileParser.sh
-i sample2.raw
-b 2-sample2.mzML
--format 2

Command exit status:
1

Command output:
2026-03-16 13:19:36 INFO Started parsing sample2.raw
2026-03-16 13:19:36 ERROR Unable to access the RAW file using the native Thermo library.
2026-03-16 13:19:36 INFO Processing completed 1 errors, 0 warnings

Command error:
2026-03-16 13:19:36 INFO Started parsing sample2.raw
2026-03-16 13:19:36 ERROR Unable to access the RAW file using the native Thermo library.
2026-03-16 13:19:36 INFO Processing completed 1 errors, 0 warnings

Work dir:
/mnt/data/projects/mspepid/mspepid-nfcore/work/ba/df9ae7f011edd11a309e600d5ae095

Container:
quay.io/biocontainers/thermorawfileparser:1.4.5--h05cac1d_1

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named .command.sh

-- Check '.nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

-- Check '.nextflow.log' file for details

Command used and terminal output

Relevant files

No response

System information

No response

Reproduce the failure with nextflow run main.nf -profile docker,test --input assets/samplesheet_empty.csv --outdir ./results, focusing on the THERMORAWFILEPARSER process and the quay.io/biocontainers/thermorawfileparser:1.4.5--h05cac1d_1 container. Inspect .nextflow.log, the reported work directory, and .command.sh; done means the empty test-file workflow no longer fails at this process.