nf-core/deepmodeloptim

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Stochastic Testing and Input Manipulation for Unbiased Learning Systems

Stars: 31
Forks: 14
Open beginner issues: 0
Indexed issues: 18

Dominant language: Nextflow
License: MIT
Last GitHub push: Jul 27, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

18 open issues indexed

Automatic cross CI once docker container has been built Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 28/100

nf-core/deepmodeloptim#242 · 1 comment · Opened Mar 24, 2025
Collect all versions and pass them correctly to MultiQC Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 32/100

nf-core/deepmodeloptim#238 · Opened Mar 20, 2025
create toolsheet for preprocessing Open

nf-core/deepmodeloptim#224 · 1 assignee · Opened Feb 19, 2025
[enhancement] do .yaml config parsing and puting into channels in groovy instead of python Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 28/100

nf-core/deepmodeloptim#205 · Opened Oct 29, 2024
Turn torch_tune into an nf-core module Open

enhancement good first issue

nf-core/deepmodeloptim#201 · 1 assignee · Opened Oct 23, 2024
Turn stimulus_transform_csv into an nf-core module Open

enhancement good first issue

nf-core/deepmodeloptim#200 · 1 assignee · Opened Oct 23, 2024
Turn stimulus_split_csv into an nf-core module Open

enhancement good first issue

nf-core/deepmodeloptim#199 · 1 assignee · Opened Oct 23, 2024
Turn check_torch_model into an nf-core module Open

enhancement good first issue

nf-core/deepmodeloptim#197 · 1 assignee · Opened Oct 23, 2024
[future][discussion] deal with data located in files Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

nf-core/deepmodeloptim#196 · Opened Oct 23, 2024
[future][discussion] how to incorporate external modules ? Open

enhancement help wanted

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/deepmodeloptim#195 · Opened Oct 23, 2024
Turn the following modules into nf-core modules Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

nf-core/deepmodeloptim#194 · Opened Oct 23, 2024
Fix nf-test after nf-core migration Open

bug good first issue

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/deepmodeloptim#193 · Opened Oct 23, 2024
Update test_full.config Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

nf-core/deepmodeloptim#188 · Opened Oct 23, 2024
Add a real test data set for full testing Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 15/100

nf-core/deepmodeloptim#187 · Opened Oct 23, 2024
Implement nf-core full tests Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/deepmodeloptim#186 · Opened Oct 23, 2024
Update USAGE.md and OUPUT.md Open

documentation enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

nf-core/deepmodeloptim#185 · 1 comment · Opened Oct 23, 2024
[feature] add logging functionalities Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 20/100

nf-core/deepmodeloptim#138 · Opened May 14, 2024
[nf-tests] Assure reproducibility Open

high priority

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/deepmodeloptim#55 · 3 comments · Opened Apr 17, 2024

nf-core/deepmodeloptim

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