nf-core / nf-core/deepmodeloptim
Implement nf-core full tests
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 31
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
We will need to find a real test dataset for the pipeline as small as possible and upload the data to AWS.
The test_full.config will need to be populated accordingly.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by inspecting test_full.config and the pipeline's existing test setup. Find the smallest suitable real test dataset and upload it to AWS, then populate test_full.config so the full pipeline tests use that data. Done means the full tests have a configured dataset and can run from the repository.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- aws
- Domain
- cloud, testing
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100