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mne-tools

26 indexed repositories · View on GitHub

mne-python
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Python · 3519 stars
mne-bids
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Python · 182 stars
mne-bids-pipeline
Automatically process entire electrophysiological datasets using MNE-Python.

Python · 169 stars
mne-features
MNE-Features software for extracting features from multivariate time series

Python · 161 stars
mne-icalabel
Automatic labeling of ICA components in Python.

Python · 123 stars
mne-nirs
Process Near-Infrared Spectroscopy Data in MNE

Python · 116 stars
mne-lsl
A framework for real-time brain signal streaming with MNE-Python.

Python · 91 stars
mne-connectivity
Connectivity algorithms that leverage the MNE-Python API.

Python · 91 stars
mne-rsa
Representational Similarity Analysis on MEG and EEG data

Python · 87 stars
mne-realtime
Realtime data analysis with MNE-Python

Python · 58 stars
mne-qt-browser
A new backend for the 2D data browser in MNE-Python

Python · 57 stars
mne-matlab
MNE scripting with Matlab

MATLAB · 45 stars
mne-denoise
Artifact removal and signal denoising for EEG and MEG.

Python · 31 stars
mne-r
Fast Access to MNE-Python From Within R

R · 30 stars
dipole-simulator
Interactive demonstration of how dipole location and orientation affect MEG and EEG sensor signals

Python · 30 stars
mne-hcp
MNE-HCP for processing the Human Connectome Project MEG data using MNE-Python

Python · 28 stars
mne-testing-data
Data for mne-python testing

HolyC · 26 stars
mne-incubator
Experimental versions of M/EEG analysis code

Python · 18 stars
mne-hfo
Estimate/compute high-frequency oscillations (HFOs) from iEEG data that are BIDS and MNE compatible using a scikit-learn-style API.

Python · 15 stars
mne-docker
Repository for mne docker images

Jupyter Notebook · 13 stars
6 more repositories live on View on GitHub

Beginner friendly Everything

Open All

Bug Report & Seeking for help: “RuntimeWarning: Loading an EDF with mixed sampling frequencies and preload=False will result in edge artifacts.” Open

BUG

Difficulty 4/5 3-5 days Newbie friendliness 25/100

mne-tools/mne-python#14321 · 4 comments · Opened Sep 20, 2026
Numerical warnings from `optical_density` / `temporal_derivative_distribution_repair` on channels in `info["bads"]` Open

ENH

Difficulty 3/5 1-2 days Newbie friendliness 68/100

mne-tools/mne-python#14318 · Opened Sep 19, 2026
BUG: interactive plot axes shrink to zero when moving cursor across plot Open

BUG

Difficulty 3/5 1-2 days Newbie friendliness 68/100

mne-tools/mne-python#14317 · Opened Sep 19, 2026
Add option to rename or ignore dependencies when syncing to environment file Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

mne-tools/mne-tools#50 · Opened Sep 17, 2026
Thoughts on moving SPEC-0 dependency bumping here Open

Difficulty 4/5 3-5 days Newbie friendliness 50/100

mne-tools/mne-tools#49 · 2 comments · Opened Sep 17, 2026
JupyterLite mangles admonitions Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

mne-tools/mne-python#14311 · 1 comment · 1 reaction · Opened Sep 15, 2026
add phase plot to plot_psd() Open

ENH

Difficulty 5/5 Over a week Newbie friendliness 35/100

mne-tools/mne-python#14309 · 1 comment · Opened Sep 14, 2026
Adding bi-exponential subtraction for decay artifact removal Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

mne-tools/mne-denoise#122 · 2 comments · Opened Sep 12, 2026
MAINT: line ending test cannot run on Windows (check git blobs instead of the working tree?) Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

mne-tools/mne-python#14299 · 2 comments · Opened Sep 11, 2026
Support higher-dimensional data in `mne.decoding.Scaler` and `mne.decoding.Vectorizer` Open

ENH

Difficulty 3/5 1-2 days Newbie friendliness 72/100

mne-tools/mne-python#14297 · 1 comment · Opened Sep 11, 2026
use zapline from mne-denoise instead of meegkit? Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

mne-tools/mne-bids-pipeline#1306 · 7 comments · Opened Sep 3, 2026
Should CTPS threshold='auto' use the trial count rather than the sampling rate? Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

mne-tools/mne-python#14267 · 5 comments · Opened Sep 2, 2026
Interpolate bridged electrodes silently interpolates using bads Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

mne-tools/mne-python#14263 · 2 comments · Opened Sep 2, 2026
ENH: expose custom scans.tsv columns when reading BIDS Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

mne-tools/mne-bids#1655 · 6 comments · Opened Aug 30, 2026
find_matching_paths never returns files with a tracksys entity; tracking_system= matches nothing Open

Difficulty 2/5 1-3 hours Newbie friendliness 75/100

mne-tools/mne-bids#1653 · 1 comment · Opened Aug 29, 2026
MNE-Python upstream reuse (v0.0.3) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

mne-tools/mne-denoise#93 · Opened Aug 28, 2026
MNE MoBI Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

mne-tools/mne-denoise#81 · 2 comments · Opened Aug 26, 2026
Update ERP tutorial Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mne-tools/mne-python#14219 · 1 comment · Opened Aug 25, 2026
Support variable-duration epochs Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

mne-tools/mne-python#14206 · 2 comments · Opened Aug 24, 2026
Propose moving spectral Granger causality to a separate function Open

mne-tools/mne-connectivity#455 · 1 comment · 1 assignee · Opened Aug 22, 2026
Investigate whether available Sphinx directives can be dynamically determined Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

mne-tools/mne-python#14189 · Opened Aug 22, 2026
MVGC - fmin and fmax before or after spectral factorization? Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

mne-tools/mne-connectivity#451 · 4 comments · Opened Aug 15, 2026
Implement OTP as a preprocessing step for pipeline Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

mne-tools/mne-bids-pipeline#1290 · Opened Aug 12, 2026
Possible contribution of a multi-source localization method to MNE-Python Open

ENH

mne-tools/mne-python#14145 · 2 comments · 1 assignee · Opened Aug 9, 2026
Torch ICLabel backend fails when global PyTorch default dtype is float64 Open

Difficulty 3/5 1-2 days Newbie friendliness 62/100

mne-tools/mne-icalabel#322 · Opened Aug 7, 2026
Coregistration GUI improvement Open

mne-tools/mne-python#14141 · 2 comments · 1 assignee · Opened Aug 7, 2026
Use dependency group recursion in environment file syncing Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

mne-tools/mne-tools#40 · Opened Aug 5, 2026
Add markers in dependency syncing to README Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

mne-tools/mne-tools#39 · Opened Aug 5, 2026
Downstream graph-analysis support Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

mne-tools/mne-connectivity#444 · 9 comments · Opened Aug 1, 2026
ENH: Deep source modeling Open

ENH

Difficulty 5/5 Over a week Newbie friendliness 35/100

mne-tools/mne-python#14097 · 7 comments · Opened Jul 24, 2026
Expected changes for 1.0 Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

mne-tools/mne-connectivity#440 · 1 comment · 1 reaction · Opened Jul 21, 2026
RawArray._init_kwargs blocks garbage collection by retaining the input NumPy ndarray Open

BUG

mne-tools/mne-python#14074 · 7 comments · 1 reaction · 1 assignee · Opened Jul 18, 2026
mne.viz.Brain modernization Open

ENH

mne-tools/mne-python#14042 · 4 comments · 1 assignee · Opened Jul 10, 2026
Pyqt6 issue Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

mne-tools/mne-nirs#700 · 1 comment · Opened Jul 10, 2026
Check typehints for rng seeds are consistent with MNE-Python Open

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

mne-tools/mne-connectivity#435 · Opened Jul 8, 2026
Supporting writing "Other" Sex from MNE-BIDS Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

mne-tools/mne-bids#1626 · 2 comments · Opened Jun 22, 2026
Figure out why Pytest 9.1.x is slow Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mne-tools/mne-connectivity#429 · Opened Jun 19, 2026
coregistration / alignment off? [EEG data] Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

mne-tools/mne-bids-pipeline#1257 · 7 comments · Opened Jun 12, 2026
Add TPU acceleration for generalized eigenvalue decompositions in decoding module (CSP, SPoC, SSD) Open

ENH

Difficulty 5/5 Over a week Newbie friendliness 35/100

mne-tools/mne-python#13959 · 3 comments · Opened Jun 12, 2026
ENH: Adding KRISS (.kdf) file reader Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

mne-tools/mne-python#13957 · 2 comments · 1 reaction · Opened Jun 9, 2026
Fallback recovery for "EGI epoch first/last samps could not be parsed" (ValueError in read_raw_egi) Open

BUG

Difficulty 4/5 3-5 days Newbie friendliness 48/100

mne-tools/mne-python#13951 · 1 comment · Opened Jun 8, 2026
Inconsistent handling of exclude='bads' in .pick() methods Open

API DOC MEDIUM

mne-tools/mne-python#13946 · 4 comments · 1 assignee · Opened Jun 6, 2026
source space step should save morph instance Open

easy enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

mne-tools/mne-bids-pipeline#1249 · Opened Jun 3, 2026
restore doc build job on GHA Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

mne-tools/mne-bids#1614 · Opened May 29, 2026
Switch doc building CI provider? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

mne-tools/mne-python#13930 · 7 comments · Opened May 28, 2026
GSoC 2026: Scaling Documentation Interactivity via JupyterLite Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

mne-tools/mne-python#13929 · 3 comments · Opened May 27, 2026
GSoC 2026: Event System meta issue Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

mne-tools/mne-python#13927 · Opened May 27, 2026
Update handling of projectors in FIF I/O Open

Difficulty 3/5 1-2 days Newbie friendliness 52/100

mne-tools/mne-python#13910 · 4 comments · Opened May 22, 2026
MNE 1.12.1, pupil data no longer being baseline-corrected Open

BUG

mne-tools/mne-python#13898 · 4 comments · 1 assignee · Opened May 15, 2026
refactor / dedup channel names getting reconciled Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

mne-tools/mne-bids#1608 · Opened May 13, 2026

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