microsoft/Graphormer

View on GitHub

Graphormer is a general-purpose deep learning backbone for molecular modeling.

Stars: 2.5k
Forks: 374
Open beginner issues: 0
Indexed issues: 92

Dominant language: Python
License: MIT
Last GitHub push: Jun 12, 2026
Latest indexed: Sep 19, 2026
Contributing guide: No contributing guide
Code of conduct: Code of conduct
Beginner labels: good first issue help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

92 open issues indexed

Reference Counting (Use-After-Free) Bug for `PyList_SetItem` Open

Difficulty 2/5 1-3 hours Newbie friendliness 72/100

microsoft/Graphormer#211 · Opened May 4, 2026
SAS updata Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

microsoft/Graphormer#210 · Opened Sep 30, 2025
Interpolation between states Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

microsoft/Graphormer#208 · Opened Apr 2, 2025
CUDA out of memory Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

microsoft/Graphormer#207 · 1 comment · Opened Jan 4, 2025
How do I prepare OC20 dataset? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#205 · Opened Nov 25, 2024
Error processing in ***.pkl ***.fasta Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

microsoft/Graphormer#204 · Opened Nov 20, 2024
DiG protein explanation Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

microsoft/Graphormer#202 · 1 comment · Opened Sep 18, 2024
Distributional Graphormer protein-ligand docking data not on Hugging Face Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

microsoft/Graphormer#201 · 4 comments · 5 reactions · Opened Sep 3, 2024
Error --AttributeError: module 'distutils' has no attribute 'version'-- when running fairseq-train and evaluate.py examples Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#198 · 1 comment · Opened Jun 11, 2024
Error running 'bash install.sh': option --use-feature: invalid choice: 'in-tree-build' Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

microsoft/Graphormer#197 · 2 comments · Opened Jun 10, 2024
About Visualization Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

microsoft/Graphormer#195 · 1 comment · Opened Jun 7, 2024
preprocess_item()中入度求解问题 Open

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

microsoft/Graphormer#192 · Opened May 26, 2024
PIDP Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

microsoft/Graphormer#190 · 1 comment · Opened May 22, 2024
Missing training scripts for proteins and protein-ligands Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

microsoft/Graphormer#187 · 4 comments · Opened May 16, 2024
Feature representations for new Proteins in DiG Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

microsoft/Graphormer#184 · 12 comments · Opened Apr 23, 2024
Lack of diversity in the 1ake example prediction by DiG Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

microsoft/Graphormer#183 · 9 comments · Opened Apr 12, 2024
Can this model be used in the field of traffic prediction？ Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

microsoft/Graphormer#180 · Opened Mar 13, 2024
Custom dataset Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

microsoft/Graphormer#179 · 2 comments · Opened Feb 28, 2024
Working Dependencies 2024? Open

Difficulty 4/5 3-5 days Newbie friendliness 15/100

microsoft/Graphormer#178 · 1 comment · Opened Jan 9, 2024
How to create a submission file for the graphormer model trained on the OC20 task Open

Difficulty 1/5 Under an hour Newbie friendliness 25/100

microsoft/Graphormer#177 · Opened Dec 21, 2023
no setup.py and --user-feature param Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

microsoft/Graphormer#174 · 2 comments · Opened Oct 27, 2023
Binary pretrained model can't train a multi-class classifier? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#172 · Opened Jul 28, 2023
No support for custom datasets in ogb format? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

microsoft/Graphormer#171 · 1 comment · Opened Jul 25, 2023
Unable to download pretrain model.HTTP error 409 Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#170 · 3 comments · 8 reactions · Opened Jul 21, 2023
OC20 checkpoint Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

microsoft/Graphormer#168 · Opened Jul 3, 2023
install.sh Issue, no access to sudo, using pip21.1 Open

Difficulty 4/5 3-5 days Newbie friendliness 32/100

microsoft/Graphormer#167 · 1 comment · Opened Jun 20, 2023
python setup.py build_ext --inplace bug Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#166 · Opened Jun 9, 2023
Pretrained OCP20 Graphormer3D model Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

microsoft/Graphormer#163 · 1 comment · 1 reaction · Opened May 5, 2023
Implementation of Graphormer based on pytorch geometric Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

microsoft/Graphormer#162 · 5 comments · 2 reactions · Opened Apr 14, 2023
Evaluation gets nan mae Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#161 · Opened Apr 4, 2023
How to train graphormer for graph classification and graph similarity learning tasks with out using fairseq? Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

microsoft/Graphormer#160 · Opened Mar 20, 2023
Command-line Tools Dataset Documentation Open

Difficulty 2/5 1-3 hours Newbie friendliness 30/100

microsoft/Graphormer#159 · 1 comment · Opened Mar 18, 2023
git clone --recursive problem Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

microsoft/Graphormer#158 · 1 comment · Opened Mar 15, 2023
How can I save outputs for my Graphormer model Open

Difficulty 2/5 1-3 hours Newbie friendliness 20/100

microsoft/Graphormer#157 · Opened Mar 4, 2023
No module named 'customized_dataset' while settiing up your own dataset Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

microsoft/Graphormer#156 · Opened Mar 1, 2023
Issue dict->Dict typing Open

Difficulty 1/5 Under an hour Newbie friendliness 45/100

microsoft/Graphormer#155 · 1 reaction · Opened Jan 30, 2023
DIsable to predict properties by fairseq-generate Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

microsoft/Graphormer#154 · 1 comment · Opened Jan 14, 2023
Very slow training Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

microsoft/Graphormer#153 · Opened Jan 3, 2023
graphormer v1.0在pcqm4m v1上的训练权重 Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

microsoft/Graphormer#152 · Opened Jan 2, 2023
Could you please elaborate on preparing the customized dataset based on my self-curated data? Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

microsoft/Graphormer#151 · 1 comment · Opened Dec 19, 2022
Errors when using algos.pyx in my own python file Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

microsoft/Graphormer#149 · Opened Dec 1, 2022
fairseq installation errors Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

microsoft/Graphormer#148 · 2 comments · Opened Nov 26, 2022
Error with customized dataset Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#147 · 2 comments · Opened Nov 14, 2022
windows cannot run bash Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

microsoft/Graphormer#144 · Opened Oct 17, 2022
About atoms and nodes Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

microsoft/Graphormer#143 · 7 comments · Opened Oct 14, 2022
About GraphormerPYGDataset’s __getitem__ Open

Difficulty 4/5 3-5 days Newbie friendliness 15/100

microsoft/Graphormer#140 · Opened Oct 5, 2022
If I want to debug fairseq-train how do I do it? Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

microsoft/Graphormer#139 · 3 comments · Opened Oct 3, 2022
About edge_attr_type Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

microsoft/Graphormer#138 · 2 comments · Opened Sep 23, 2022
About Periodic boundary condition invariance Open

good first issue

Difficulty 5/5 Over a week Newbie friendliness 20/100

microsoft/Graphormer#137 · Opened Sep 22, 2022
Argument edge_type Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

microsoft/Graphormer#136 · 1 comment · Opened Aug 23, 2022

microsoft/Graphormer

Get new issues in your inbox