Cloned repository is dirty

Reproduction steps

Clone remote repository to local folder

var options = new CloneOptions
  {
    CredentialsProvider = (url, user, cred) => new UsernamePasswordCredentials { Username = userName, Password = passWord }
    };
Repository.Clone(_remoteUrl, _localPath, options);

Expected behavior

git status must return nothing to commit, working tree clean

Actual behavior

git status returns

Changes to be committed:
  (use "git restore --staged <file>..." to unstage)
        deleted:    Managers/ashish.reddy-automation-eng.productsem-20191015.yaml
        deleted:    Managers/ashish.reddy-coaching-eng.productsem-20191003.yaml
        deleted:    Managers/ashish.reddy-coaching-eng.productsem-20191015.yaml
        deleted:    Managers/gowtham.ramachandra-coaching-Eng.Manager-20191008.yaml
        deleted:    Managers/gowtham.ramachandra-coaching-Eng.Manager-20191009.yaml
        deleted:    Managers/gowtham.ramachandra-process-improvement-Eng.Manager-20191008.yaml
        deleted:    Managers/radhesh.radhakrishnan-process-improvement-eng.manager-20191011.yaml

Changes not staged for commit:
  (use "git add <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
        modified:   DataStructures/automation-schema.json
        modified:   DataStructures/coaching-schema.json
        modified:   DataStructures/process-improvement-schema.json

Untracked files:
  (use "git add <file>..." to include in what will be committed)
        _git2_a18992

Version of LibGit2Sharp (release number or SHA1)

0.26.2

Operating system(s) tested; .NET runtime tested

Windows 10 Version 2004 10.0.19041
.Net Core 3.1

首先，在 Windows 10 和 .NET Core 3.1 上使用 LibGit2Sharp 0.26.2，透過 Repository.Clone 和所示的 CloneOptions 重現報告。檢查複製結果並將其與 git status 比較；當新的複製沒有已暫存、未暫存或未追蹤的變更時，即表示完成。