khanlab/snakebids

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Snakemake + BIDS

Stars: 23
Forks: 16
Open beginner issues: 0
Indexed issues: 24

Dominant language: Python
License: MIT
Last GitHub push: Mar 13, 2026
Latest indexed: Sep 18, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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24 open issues indexed

Merry PROV, snakebids and BIDS into the ultimate neuro* PROV trinity Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

khanlab/snakebids#541 · Opened Apr 29, 2026
Reimplement Snakebids expand using SnakemakeFormatter Open

enhancement

khanlab/snakebids#513 · 1 comment · 1 reaction · 2 assignees · Opened Feb 20, 2026
No components found when `--participant-label` requests only non-existant subjects Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 48/100

khanlab/snakebids#479 · Opened Nov 5, 2025
`--participant-label` is not merged with configured subject filters Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

khanlab/snakebids#478 · Opened Nov 5, 2025
ConfigError: Multiple path templates for 't1w' component using generate_inputs Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

khanlab/snakebids#469 · 13 comments · Opened Jul 14, 2025
Snakebids create docs Open

Difficulty 1/5 Under an hour Newbie friendliness 48/100

khanlab/snakebids#434 · 3 comments · Opened Jun 3, 2024
Version plugin does not add CLI parameter Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

khanlab/snakebids#412 · 1 comment · Opened Apr 22, 2024
Extension of `BidsComponent.filter` api Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

khanlab/snakebids#335 · Opened Sep 6, 2023
`export_sourcedir` plugin Open

enhancement plugin

Difficulty 5/5 Over a week Newbie friendliness 25/100

khanlab/snakebids#304 · 2 comments · Opened Jun 2, 2023
Mandatory vs Optional components in `pybids_inputs` Open

enhancement

khanlab/snakebids#293 · 2 comments · 1 assignee · Opened May 16, 2023
Improve implementation of `get()` in `MultiSelectDict` Open

enhancement

khanlab/snakebids#292 · 2 comments · 1 assignee · Opened May 15, 2023
Allow specification of `snakebids` config file Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

khanlab/snakebids#257 · Opened Feb 22, 2023
Automatically create pybidsdb Open

enhancement plugin

Difficulty 5/5 Over a week Newbie friendliness 30/100

khanlab/snakebids#256 · Opened Feb 22, 2023
Method to find entity combinations "missing" from dataset Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

khanlab/snakebids#248 · 1 comment · Opened Feb 16, 2023
`BidsDataset` advanced component selection Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

khanlab/snakebids#244 · 1 comment · Opened Feb 11, 2023
`BidsDataset.expand()` Open

enhancement

khanlab/snakebids#242 · 1 assignee · Opened Feb 11, 2023
`BidsDataset.filter` Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

khanlab/snakebids#241 · 1 comment · Opened Feb 11, 2023
Transition to breaking `BidsDataset` API Open

breaking

Difficulty 4/5 3-5 days Newbie friendliness 35/100

khanlab/snakebids#239 · Opened Feb 11, 2023
Breaking `BidsDataset` API Changes Open

breaking

Difficulty 5/5 Over a week Newbie friendliness 25/100

khanlab/snakebids#236 · Opened Feb 11, 2023
add an easy way for user to add a README and dataset_description to their output Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

khanlab/snakebids#221 · 6 comments · Opened Jan 3, 2023
demo on the bids apps website Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

khanlab/snakebids#189 · 6 comments · Opened Aug 4, 2022
Rerunning Apps Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 30/100

khanlab/snakebids#182 · 6 comments · 1 reaction · Opened Jul 21, 2022
Document the availability of `workflow.basedir` and `workflow.current_basedir` Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

khanlab/snakebids#109 · Opened Jan 11, 2022
Custom Path Wildcard Constraints need Documentation Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 45/100

khanlab/snakebids#108 · Opened Jan 11, 2022

khanlab/snakebids

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