Merry PROV, snakebids and BIDS into the ultimate neuro* PROV trinity
- Dominant language
- Python
- Stars
- 23
- Forks
- 16
- PR merge metrics
- No merged PRs in 30d
Description
Recently @poldrack blogged about his new book chapter
https://russpoldrack.substack.com/p/tracking-provenance-in-workflows
which used snakemake and https://github.com/bennokr/makeprov by @bennokr. There is an outstanding call for review of BEP028 -- BIDS-Prov:
https://github.com/bids-standard/bids-specification/discussions/2405
**please contribute there your feedback!!!**
and I thought it would have been just awesome if ideas of that automated from snakemake prov collection where also automated here (or in makeprov?) into bids028-prov records within BIDS datasets.
Contributor guide
No contributing guide indexed for this repository
Research direction
The issue names no repository files, tests, or entry points. Start by reviewing the linked BIDS-Prov BEP028 discussion and the referenced makeprov project, then determine the intended integration boundary for generating provenance records from Snakemake workflows. Done should be a documented, agreed implementation scope rather than an unspecified proposal.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100