int-brain-lab/iblenv

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Unified environment and Issue tracker for all IBL

Stars: 19
Forks: 10
Open beginner issues: 0
Indexed issues: 61
Avg merge: 32m
Merged PRs (30d): 2

Dominant language: Jupyter Notebook
License: MIT
Last GitHub push: Aug 25, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

61 open issues indexed

Alignment of pose data and video when downloading from Dandi Archive (ID: 000409) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

int-brain-lab/iblenv#432 · Opened Mar 5, 2026
[EXTRACT] Incorrect project assignments Open

int-brain-lab/iblenv#431 · 1 comment · 2 assignees · Opened Mar 3, 2026
Mesoscope timestamp extraction mismatch Open

data integrity

int-brain-lab/iblenv#429 · 1 comment · 1 assignee · Opened Feb 17, 2026
reproject a session from samuel Open

int-brain-lab/iblenv#427 · 1 comment · 1 assignee · Opened Jan 30, 2026
[EXTRACT] Handle NI DAQ task extraction with no Bpod wheel Open

int-brain-lab/iblenv#426 · 1 assignee · Opened Jan 30, 2026
Mbox ubuntu end of life Open

int-brain-lab/iblenv#425 · 1 assignee · Opened Jan 27, 2026
Wheel data is inverted for sessions from the widefield rig Open

int-brain-lab/iblenv#421 · 1 comment · 1 assignee · Opened Jan 12, 2026
inspect mesoscope failing tasks Open

int-brain-lab/iblenv#417 · 1 comment · 1 assignee · Opened Sep 9, 2025
Geeting coordiantes and acronyms in Franklin Paxinos framework for IBL data Open

question

Difficulty 4/5 3-5 days Newbie friendliness 20/100

int-brain-lab/iblenv#414 · 1 comment · Opened Aug 21, 2025
[Usage question] - Finding a region not labeled Open

question

Difficulty 4/5 3-5 days Newbie friendliness 25/100

int-brain-lab/iblenv#412 · 2 comments · Opened Aug 1, 2025
[EXTRACT] missing trials data for optogenetics sessions Open

int-brain-lab/iblenv#409 · 1 comment · 1 assignee · Opened Jun 13, 2025
How to find passive sessions Open

data integrity question

Difficulty 4/5 3-5 days Newbie friendliness 35/100

int-brain-lab/iblenv#408 · Opened May 27, 2025
[Usage question] - Discrepancy between ibl brain atlas and allen ccfv3 Open

question

Difficulty 4/5 3-5 days Newbie friendliness 30/100

int-brain-lab/iblenv#407 · Opened May 8, 2025
support daq based recording of bpod sync signals Open

int-brain-lab/iblenv#406 · 1 assignee · Opened Apr 8, 2025
deploy pipeline running at CCU to cortexlab Open

int-brain-lab/iblenv#405 · 1 assignee · Opened Apr 8, 2025
[Bug report] - `numpy.frombuffer` buffer size error Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

int-brain-lab/iblenv#403 · Opened Mar 1, 2025
Get the photometry pipeline up and running Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

int-brain-lab/iblenv#394 · Opened Jan 20, 2025
Wheel data polarity is inverted for some sessions Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 30/100

int-brain-lab/iblenv#391 · Opened Jan 20, 2025
Python 3.8 end of life Open

int-brain-lab/iblenv#381 · 1 comment · 1 assignee · Opened Oct 4, 2024
BWM to NWB conversion Open

int-brain-lab/iblenv#388 · 4 comments · 2 assignees · Opened Sep 13, 2024
Run pykilosort on hybrid UHD dataset Open

int-brain-lab/iblenv#377 · 1 comment · 1 assignee · Opened Aug 6, 2024
Test support issue Open

bug

int-brain-lab/iblenv#353 · 1 assignee · Opened Dec 7, 2023
Session completion status on Alyx for dynamic pipeline Open

enhancement

int-brain-lab/iblenv#348 · 1 assignee · Opened Oct 12, 2023
Prior paper code review Open

int-brain-lab/iblenv#337 · 2 comments · 2 assignees · Opened May 22, 2023
Register the Clusters tables in Alyx Open

int-brain-lab/iblenv#330 · 2 assignees · Opened May 10, 2023
Aggregate table: create an interface in ONE to download data Open

int-brain-lab/iblenv#329 · 3 assignees · Opened May 10, 2023
Issue with opening files on the IBL ENV GUI Open

awaiting-feedback

int-brain-lab/iblenv#309 · 9 comments · 1 assignee · Opened May 19, 2022
Problem doing ALF conversion on phy sorted files which have merged or split clusters Open

int-brain-lab/iblenv#308 · 4 comments · 1 assignee · Opened May 18, 2022
[Bug report] - TypeError: a bytes-like object is required, not 'str' Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

int-brain-lab/iblenv#305 · 9 comments · Opened Apr 28, 2022
[Bug report] - Unable to upload histology to Alyx Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

int-brain-lab/iblenv#301 · Opened Apr 7, 2022
Unable to load data onto IBL ENV GUI Open

enhancement external

int-brain-lab/iblenv#297 · 8 comments · 1 assignee · Opened Mar 31, 2022
Issue with saving AP & LF RMSMAP Open

external

int-brain-lab/iblenv#296 · 1 assignee · Opened Mar 30, 2022
[Bug report] - Slow performance of ONE on M1 mac native python (not urgent) Open

bug

int-brain-lab/iblenv#295 · 2 comments · 1 assignee · Opened Mar 28, 2022
SpikeSortingLoader sl.load_spike_sorting() halts when used in loop Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

int-brain-lab/iblenv#292 · Opened Mar 10, 2022
[Feature request] - Allow adding trajectory estimates by non-root logins Open

enhancement

int-brain-lab/iblenv#291 · 1 comment · 1 assignee · Opened Mar 10, 2022
Recording issue Open

int-brain-lab/iblenv#286 · 1 assignee · Opened Feb 28, 2022
[Feature request] - QC versioning Open

data integrity enhancement

int-brain-lab/iblenv#273 · 1 assignee · Opened Oct 28, 2021
[Bug report] - Live plotting incorrect blocks in ephysChoiceWorld_testing Open

bug

int-brain-lab/iblenv#258 · 1 assignee · Opened Sep 15, 2021
Extraction issue for feedback on error trials Open

bug

int-brain-lab/iblenv#249 · 1 assignee · Opened Jul 21, 2021
Pupil diameter on flatiron Open

enhancement

int-brain-lab/iblenv#244 · 1 comment · 1 assignee · Opened Jun 28, 2021
[Bug report] - Corrupt raw camera timestamps Open

bug working-on-it

int-brain-lab/iblenv#237 · 1 comment · 1 assignee · Opened May 5, 2021
[Bug report] - Kilosort --> IBL-format fails after using Phy Open

bug working-on-it

int-brain-lab/iblenv#230 · 1 assignee · Opened Apr 27, 2021
For at least 2 Zadorlab sessions all feedback_times are nan for negative feedbackType Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

int-brain-lab/iblenv#213 · 2 comments · Opened Mar 10, 2021
session with dlc but without camera timestamps Open

bug

int-brain-lab/iblenv#208 · 4 comments · 1 assignee · Opened Mar 5, 2021
[Bug report] - Trials dimensions inconsistent Open

bug

int-brain-lab/iblenv#203 · 1 comment · 1 assignee · Opened Feb 23, 2021
[Feature request] - singlecell.calculate_peths should warn about nan event times Open

enhancement

int-brain-lab/iblenv#183 · 2 comments · 1 assignee · Opened Feb 2, 2021
[Bug report] - Video transfer script looks in the wrong place for the flag after renaming Open

bug

int-brain-lab/iblenv#180 · 1 assignee · Opened Feb 1, 2021
[Bug report] - trials object values not being extracted properly: goCue_times, stimOn_times, stimOff_times, etc Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

int-brain-lab/iblenv#179 · 1 comment · Opened Jan 29, 2021
[Bug report] - KeyError: 'brainLocationIds_ccf_2017' in repeated site session Open

bug

int-brain-lab/iblenv#175 · 1 comment · 1 assignee · Opened Jan 26, 2021
[Bug report] - compute_bias_info returns different bias on each call Open

bug working-on-it

int-brain-lab/iblenv#174 · 5 comments · 1 assignee · Opened Jan 25, 2021

int-brain-lab/iblenv

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