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ins-amu

9 indexed repositories · View on GitHub

BVEP
The Bayesian Virtual Epileptic Patient: a probabilistic framework designed to infer the spatial map of epileptogenicity in a personalized...

Jupyter Notebook · 37 stars
scripts
prepare data for TVB

C++ · 23 stars
vbi
Virtual Brain Inference

Python · 23 stars
vbjax
A nascent Jax-based package for virtual brain modeling.

Python · 14 stars
tvb-pipeline
INS TNG pipeline for TVB simulations

Python · 9 stars
virtual_aging_brain
This is the main repository of the Virtual Aging Brain (VAB). The code will be available soon.

Jupyter Notebook · 6 stars
cluster
Docs on cluster

Jupyter Notebook · 3 stars
SeizureSpreadOnACorticalSurface
Code for computational modeling of seizure spread on a cortical surface using The Virtual Brain

Python · 1 star
tvb_hip

Jupyter Notebook · 0 stars

Open All

add MNE M/EEG projection matrix computation Open

enhancement

ins-amu/scripts#26 · 9 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
add check for surface Open

enhancement

ins-amu/scripts#30 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
change the subcortical surfaces used for the computation of center and orientation Open

ins-amu/scripts#45 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
CGAL mesh simplification procedures Open

enhancement

ins-amu/scripts#49 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
interpolated cortical surface Open

enhancement

ins-amu/scripts#52 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Handle groups normalization Open

ins-amu/scripts#54 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
makefile Open

ins-amu/scripts#57 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
fast region mapping visualizer Open

enhancement

ins-amu/scripts#61 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
subcortical and cortical surfaces are not aligned Open

bug

ins-amu/scripts#62 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
mrview works from docker Open

ins-amu/scripts#65 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Options in mrtrix functions Open

ins-amu/scripts#68 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
surface subparcellation Open

enhancement

ins-amu/scripts#70 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Use new version of remesher Open

enhancement

ins-amu/scripts#71 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
there are some problem when prepare the environment taa Open

ins-amu/SeizureSpreadOnACorticalSurface#1 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Enable DWI preprocessing Open

ins-amu/tvb-pipeline#1 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
An error occurred while running docker Open

ins-amu/tvb-pipeline#3 · 12 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
About gain matrix Open

ins-amu/tvb-pipeline#4 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Error in generating connectivity.vep.zip Open

ins-amu/tvb-pipeline#5 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
There is an error in the brain region name of centres.txt in the tvb file Open

ins-amu/tvb-pipeline#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Access auth with ActiveDirectory Open

question

ins-amu/cluster#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Auto-built Singularity images for standard cases Open

ins-amu/cluster#5 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add doc on fuse mounts Open

ins-amu/cluster#6 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Update doc on MATLAB compilation Open

ins-amu/cluster#7 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Update doc on SSH usage Open

ins-amu/cluster#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Missing Metadata Open

ins-amu/virtual_aging_brain#1 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Upper triangle extraction of FCD includes zeros Open

ins-amu/virtual_aging_brain#7 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
App folder name should match downstream repo name Open

ins-amu/tvb_hip#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Run longer tests nightly Open

ins-amu/tvb_hip#2 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Setup data caching layer for testing Open

ins-amu/tvb_hip#3 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
cli Open

ins-amu/tvb_hip#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
task queue instead of direct execution Open

ins-amu/tvb_hip#5 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
build appimage Open

ins-amu/tvb_hip#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How to start this project Open

ins-amu/BVEP#1 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Adapt recursion formula for computing SHT coefficients Open

ins-amu/vbjax#1 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Implement a TVB backend based on vbjax Open

ins-amu/vbjax#2 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Scalable data-model-algo test suite Open

ins-amu/vbjax#3 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Incorporate alternative sparse matrix-vector multiplication implementations Open

ins-amu/vbjax#4 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Collect use cases from inversion repos Open

ins-amu/vbjax#5 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add colored noise option Open

ins-amu/vbjax#7 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Examples with multiple connectivities Open

documentation

ins-amu/vbjax#8 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Generate Sphinx docs Open

documentation

ins-amu/vbjax#11 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Implicit scheme Open

enhancement

ins-amu/vbjax#12 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Support approximations Open

enhancement

ins-amu/vbjax#13 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add phase flow reconstruction techniques Open

enhancement

ins-amu/vbjax#14 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Support hybrid centering Open

enhancement

ins-amu/vbjax#17 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026
Phase plane tools Open

enhancement

ins-amu/vbjax#20 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add tests for partial observed node dynamics Open

documentation enhancement good first issue help wanted

ins-amu/vbjax#29 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Basis embeddings should be sparse Open

enhancement good first issue

ins-amu/vbjax#31 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Implement bounds for state variables Open

enhancement

ins-amu/vbjax#34 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 17, 2026
AdEx model optimization Open

enhancement

ins-amu/vbjax#35 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 17, 2026

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