MCP tool arguments with array-or-string union schema (anyOf) are stringified before reaching the server

Describe the bug

When an MCP tool parameter's JSON Schema declares a union that includes both array and string (e.g. anyOf: [array, string] or a Zod z.union([z.array(z.string()), z.string(), z.null()])), Copilot CLI's MCP client flattens/stringifies the argument before sending it to the server -- even when a genuine JSON array is supplied. The MCP server (which correctly expects and validates an array) then rejects the call, because it receives a bare string instead.

This reproduces against the Obsidian Local REST API plugin's MCP server (obsidian-mcp), specifically its vault_patch and vault_read tools' target parameter, used for heading-path addressing (e.g. ["Parent Heading", "Child Heading"]).

Affected version

GitHub Copilot CLI 1.0.76 (Windows)

Steps to reproduce the behavior

1. Register an MCP server exposing a tool whose parameter schema is z.union([z.array(z.string()), z.string(), z.null()]) (or the JSON-Schema equivalent anyOf: [{type: array, items: {type: string}}, {type: string}, {type: null}]).
2. From Copilot CLI, call that tool with a genuine array value, e.g. target: ["Top", "Child"].
3. Observe the server rejects the call as if a bare string were sent (e.g. A heading target must be an array of heading texts, not a bare string), even though the client was given a proper array.
4. Direct/bypass test: calling the identical tool with the identical array directly against the server's /mcp JSON-RPC endpoint (bypassing the Copilot CLI client) succeeds and returns the correct result -- confirming the server is correct and the array is valid.

Root cause (isolated via a controlled A/B test)

We edited the MCP server's own schema for the affected parameter, removing the string option so the union became array | null only (no code changes elsewhere; identical Copilot CLI client, identical server, identical call). With that one change:

• The exact same array argument (["Top", "Child"]) that previously failed now succeeded and correctly resolved a two-level nested heading.
• A single-element array (["Top"]) also succeeded.

This isolates the bug precisely: Copilot CLI's MCP client only mis-serializes array arguments when the parameter's declared schema is a union that also includes string. Parameters that are plain/unconstrained JSON (no such union), or presumably schemas of array | null with no string sibling, pass arrays through untouched -- we independently confirmed a plain JSON-typed parameter (no union) on the same server correctly accepted and round-tripped a real array in the same session.

Reproduction table

Expected behavior

A genuine JSON array argument should be transmitted to the MCP server as an array, regardless of whether the parameter's schema also permits a string (or other) alternative in the same union/anyOf.

Additional context

• This is likely related to #2634, which reports Copilot CLI's MCP tool-schema handling losing/narrowing fields and unions (including an anyOf mixing array and object) between what an MCP server advertises and what the model/client actually uses. That report is about schema-definition loss at tool-discovery time; this report is about argument-value corruption at call time for a union schema. Both point at the same general area of Copilot CLI's MCP layer mishandling anyOf/union types that include array, so they may share a root cause.
• This is scoped narrowly: it is not "Copilot CLI can't send array arguments" -- arrays work fine for parameters with a plain array (or non-union) schema. The bug is specific to a schema union that pairs array with string (and possibly other non-array types).

Bắt đầu trong đường dẫn máy khách MCP của Copilot CLI chuyển đổi các schema công cụ được quảng bá thành các đối số gọi, sử dụng bản tái hiện /mcp JSON-RPC đã được ghi lại để so sánh các yêu cầu trực tiếp và các yêu cầu qua CLI. Xác minh rằng các giá trị array và null vẫn là các giá trị có kiểu khi anyOf bao gồm array, string và null, đồng thời các trường hợp array thuần túy và không phải union hiện có tiếp tục hoạt động.