const-ae / const-ae/sparseMatrixStats
colVars for dgeMatrix
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Beschreibung
I am working with large sparse matrices that, after some operations, can return non-sparse matrices of class `dgeMatrix`.
I must be missing something here, but when I try to get colVars for a `dgeMatrix`, I get
```
Error in MatrixGenerics:::.load_next_suggested_package_to_search(x) :
Failed to find a colVars() method for dgeMatrix objects.
```
even though `colMeans2` works just fine.
Here is some (hopefully) reproducible code:
```
m <- Matrix(nrow = 3, ncol = 6, data = rnorm(18), sparse = FALSE)
sparseMatrixStats::colVars(m)
```
PS: `matrixStats::colVars(m)` returns
```
Error in matrixStats::colVars(m) :
Argument 'x' must be a matrix or a vector.
```
and calling `as.matrix` prior to `matrixStats::colVars` is very slow on larger matrices.
Any help would be much appreciated.
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Rechercherichtung
Start by reproducing the example with sparseMatrixStats::colVars() on a dgeMatrix, then trace the colVars dispatch alongside the working colMeans2 path. The issue is resolved when colVars works for dgeMatrix inputs without converting large matrices with as.matrix().
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