const-ae/glmGamPoi

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Fit Gamma-Poisson Generalized Linear Models Reliably

Stars: 126
Forks: 18
Open beginner issues: 0
Indexed issues: 22

Dominant language: R
License: No license data
Last GitHub push: May 26, 2026
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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22 open issues indexed

Tests fail on i386 (really i686): ailure: qres.gampoi can handle other weird values (@test-residuals.R#112) `a` is not strictly more than `b`. Difference: 0 Open

const-ae/glmGamPoi#15 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Use for pseudobulk differential expression - advantages & logFC values Open

const-ae/glmGamPoi#22 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
pseudobulk_by apparently dropping columns Open

const-ae/glmGamPoi#23 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
determining the less trustworthy log2fc values Open

const-ae/glmGamPoi#27 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
test_de failing with on_disk models Open

const-ae/glmGamPoi#33 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Too many DEGs? Open

const-ae/glmGamPoi#35 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Core Usage Open

const-ae/glmGamPoi#36 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Can't install the package on MacOS Monterey Open

const-ae/glmGamPoi#37 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Error in pseudobulk step Open

const-ae/glmGamPoi#39 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
compare multiple pairs concurrently Open

const-ae/glmGamPoi#40 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
glmGamPoi scales cubically with the number of design matrix columns Open

const-ae/glmGamPoi#41 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Error in handle_design_parameter(design, data, col_data, reference_level) : Too few replicates / too many coefficients to fit model. Open

const-ae/glmGamPoi#42 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Compatibility with R 3 Open

const-ae/glmGamPoi#48 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
compilation error Open

const-ae/glmGamPoi#49 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Standard error of the overdispersion estimates Open

const-ae/glmGamPoi#50 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
HDF5Array is not available for package glmGamPoi Open

const-ae/glmGamPoi#54 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[FR] Implement `logLik.glmGamPoi` Open

const-ae/glmGamPoi#58 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
NaNs in standard errors of LFC Open

const-ae/glmGamPoi#69 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Question regarding the difference of running glmGamPoi on a subset of data or on the whole data. Open

const-ae/glmGamPoi#72 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Potential discrepancy in second derivative of log-likelihood (Hessian) for overdispersion parameter \theta in overdispersion.cpp Open

const-ae/glmGamPoi#74 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Question regarding the role of xim in overdispersion theta estimation Open

const-ae/glmGamPoi#75 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Why do not return shrunken dispersion as the ultimate overdispersion? Open

const-ae/glmGamPoi#76 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

const-ae/glmGamPoi

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