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carpentries-incubator
103 indexed repositories · View on GitHub
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geospatial-python
Introduction to Geospatial Raster and Vector Data with Python
160 stars
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hpc-intro
Using High-Performance Computing Systems
TeX · 159 stars
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proposals
Open an issue in this repository to share Carpentries-style lessons and lesson ideas.
97 stars
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python-intermediate-development
Intermediate Research Software Development Skills (Python)
TeX · 63 stars
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docker-introduction
Reproducible Computational Environments using Containers
Python · 53 stars
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SDC-BIDS-fMRI
fMRI Imaging Analysis
Jupyter Notebook · 49 stars
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targets-workshop
Pre-alpha {targets} workshop
R · 37 stars
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SDC-BIDS-sMRI
Structural Neuroimaging Analysis in Python
Jupyter Notebook · 36 stars
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workflows-nextflow
Workflow management with Nextflow and nf-core
Nextflow · 33 stars
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machine-learning-novice-sklearn
A Carpentry style lesson on machine learning with Python and scikit-learn.
Jupyter Notebook · 30 stars
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shell-extras
Extra Unix Shell Material
Python · 28 stars
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intro-to-modern-fortran
Introduction to Modern Fortran
R · 28 stars
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SDC-BIDS-IntroMRI
Introduction to MRI and BIDS
Jupyter Notebook · 27 stars
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SDC-BIDS-dMRI
Introduction to dMRI
Jupyter Notebook · 27 stars
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bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
R · 27 stars
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bioc-intro
Bioconductor data science introduction
R · 27 stars
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ml4bio-workshop
Materials for a workshop introducing machine learning to biologists
Jupyter Notebook · 25 stars
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python-packaging-publishing
Packaging and Publishing with Python
Python · 24 stars
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snakemake-novice-bioinformatics
Introduction to Snakemake for Bioinformatics
Python · 22 stars
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julia-novice
A lesson exploring the Julia language
Julia · 21 stars
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enhancement
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enhancement help wanted
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bug help wanted
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CLI skipped step. Open
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help wanted
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Screenshots are generally out of date due to changes in GitHub's interface in the past few years. Openhelp wanted
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carpentries-incubator/lc-xml#1 · 6 comments · 0 reactions · 1 assignee ·
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Adjust Branches Open
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Creating exercises Openbackground help wanted
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help wanted
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help wanted
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enhancement
carpentries-incubator/cwl-novice-tutorial#34 · 1 comment · 0 reactions · 0 assignees ·
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carpentries-incubator/cwl-novice-tutorial#42 · 1 comment · 0 reactions · 0 assignees ·
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Setup for Mac M1 Open
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