Owner

blekhmanlab

9 indexed repositories · View on GitHub

• host_gene_microbiome_interactions

  Analysis framework for integrating gut microbiome and host gene expression data

  R · 36 stars

• biomehorizon

  Plot microbiome time series in parallel

  R · 27 stars

• MicroBioMap

  R package for fetching and parsing data of the Human Microbiome Compendium

  R · 17 stars

• hominid

  Hominid: host-microbiome interaction identification

  Python · 16 stars

• compendium

  Metadata ingest service

  Python · 9 stars

• compendium_website

  Website for the Human Microbiome Compendium

  TypeScript · 2 stars

• snakemake-template

  Quickstart for building out a new snakemake pipeline

  Python · 0 stars

• docker_dada2

  Docker convenience image containing R and the DADA2 package (plus dependencies), used for processing amplicon data.

  Dockerfile · 0 stars

• snakemake-compendium

  Human Microbiome Compendium processing pipeline

  R · 0 stars