"The system cannot find the path specified." When running script with Shebang

When I try to run a python script with a shebang like `#!/usr/bin/env python` I get the error `The system cannot find the path specified.` When I remove the shebang the script works as normal however. Is this a problem with Atom starting in the wrong directory? I tried starting it from the command line in root but that didn't fix it.

This is also likely a problem for most scripts (I believe this occurs when running Perl scripts as well).

まず、`#!/usr/bin/env python`を使用するPythonスクリプトでatom-scriptの失敗を再現し、次にshebangなしの同じスクリプトと比較します。Perlやその他のshebangベースのスクリプトでも同じ動作になるか確認します。対応しているスクリプトがパスエラーなしで正常に実行されれば完了です。

索引モデルが issue の本文から書いたものです。