Project-MONAI / Project-MONAI/tutorials
endoscopy example doesn't work out of the box
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- Dominant language
- Jupyter Notebook
- Stars
- 2.5k
- Forks
- 803
- Avg merge
- 6d 22h
- Merged PRs (30d)
- 3
Description
The endoscopy example needs the endovis data, but this isn't referred to on the page, nor are there any instructions for downloading the correct data. We downloaded a sample set from a MONAI tutorial, and this gave us 9 jpg frames. When we started the MONAI label server, all 9 frames were loaded in slicer. I imagine this should have been just 1 file so that we could do the segmentation and then get the next frame.
More info on how to get the example running on the README would be beneficial.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the endoscopy example README and verify the endovis data expected by the MONAI Label server in Slicer. Document where to download the correct data and how to launch the example; done when a fresh user can load the intended data and proceed through the segmentation workflow.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, pytorch
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100