PEtab-dev / PEtab-dev/libpetab-python
add: plotting STD if the column noiseParameter has values and no replicates available
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- Dominant language
- Python
- Stars
- 18
- Forks
- 9
- PR merge metrics
- No merged PRs in 30d
Description
e.g. the Chen model has specified noiseParameters in the measurement data, and no replicate measurement data is available. (so, standard deviation cant be calculated from replicates)
For plotting the standard deviation if no measurement replicates are available, and the column noiseParameters has values, plot these values as standard deviation.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the plotting entry point that handles measurement replicates and the noiseParameter column. Check the Chen-model case described in the issue, then verify that noiseParameter values are used as standard deviation only when replicates are unavailable and those values exist.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100