MrGiovanni / MrGiovanni/ModelsGenesis
Not able to fine tune nnUNet with the "competition" style fine-tuning method
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Description
Hi @MrGiovanni @sbajpai2,
Thank you so much for all your work, it is fantastic!
I'm following the method "Usage of the pre-trained nnU-Net" from the competition folder, but I'm having my own dataset. Essentially, I'm trying to fine-tune nnUNet + Model genesis to my own data. I've followed all the steps as per your usage here.
When I start my nnUNet fine-tuning at step 3, I don't see any message like ""############################################### Loading pre-trained Models Genesis from " or even '############################################### Training from scratch'.
I'm only able to see the nnUNet's usual log messages. I have ensured that I'm correctly following all the steps shown.
Could you please suggest where I'm going wrong?
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Research direction
Start with competition/README.md, especially the documented Usage of the pre-trained nnU-Net example and step 3, then reproduce the fine-tuning command with the custom dataset. Compare the expected pre-trained or from-scratch messages with the nnU-Net logs; done means identifying a concrete configuration or documentation correction.
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Assessment
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100