LewisLabUCSD/Mito_Trace

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Tracking cell-lineage using mutations in the mitochondrion genome.

Stars: 0
Forks: 0
Open beginner issues: 0
Indexed issues: 21

Dominant language: Jupyter Notebook
License: No license data
Last GitHub push: Mar 16, 2023
Latest indexed: Sep 18, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

21 open issues indexed

growth of poisson refactor Open

todo

Difficulty 5/5 Over a week Newbie friendliness 20/100

LewisLabUCSD/Mito_Trace#49 · Opened May 25, 2021
Add the MT clone map so it can contain multiple mutants in lineages Open

todo

Difficulty 5/5 Over a week Newbie friendliness 25/100

LewisLabUCSD/Mito_Trace#48 · Opened May 25, 2021
Add the MT clone map so it can contain multiple mutants in lineages Open

todo

Difficulty 5/5 Over a week Newbie friendliness 25/100

LewisLabUCSD/Mito_Trace#46 · Opened May 25, 2021
account for mt_pos being a list not an int Open

todo

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

LewisLabUCSD/Mito_Trace#45 · Opened May 25, 2021
This should be in mro/common for general use Open

todo

Difficulty 4/5 3-5 days Newbie friendliness 35/100

LewisLabUCSD/Mito_Trace#44 · Opened May 25, 2021
account for mt_pos being a list not an int Open

todo

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

LewisLabUCSD/Mito_Trace#37 · Opened Dec 10, 2020
This should be in mro/common for general use Open

todo

Difficulty 4/5 3-5 days Newbie friendliness 35/100

LewisLabUCSD/Mito_Trace#36 · Opened Dec 10, 2020
This should be in mro/common for general use Open

todo

Difficulty 4/5 3-5 days Newbie friendliness 32/100

LewisLabUCSD/Mito_Trace#35 · Opened Dec 10, 2020
Refactor metrics part of the simulation class to a separate class Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

LewisLabUCSD/Mito_Trace#32 · Opened Oct 28, 2020
Implement Cassiopeida Open

good first issue

Difficulty 5/5 Over a week Newbie friendliness 15/100

LewisLabUCSD/Mito_Trace#31 · Opened Oct 28, 2020
Implement mgatk Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

LewisLabUCSD/Mito_Trace#30 · Opened Oct 28, 2020
growth of poisson refactor Open

todo

Difficulty 5/5 Over a week Newbie friendliness 20/100

LewisLabUCSD/Mito_Trace#28 · Opened Oct 27, 2020
account for mt_pos being a list not an int Open

todo

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

LewisLabUCSD/Mito_Trace#25 · Opened Oct 27, 2020
Running simulation overflows RAM Open

enhancement

LewisLabUCSD/Mito_Trace#23 · 1 assignee · Opened Oct 27, 2020
Simulation with new MT mutants Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

LewisLabUCSD/Mito_Trace#22 · Opened Oct 27, 2020
Writeup for Simulation Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 35/100

LewisLabUCSD/Mito_Trace#21 · Opened Oct 27, 2020
Kmeans Clustering simulation results Open

todo

Difficulty 5/5 Over a week Newbie friendliness 20/100

LewisLabUCSD/Mito_Trace#20 · 1 comment · Opened Oct 27, 2020
Simulation Run Open

Epic

Difficulty 5/5 Over a week Newbie friendliness 25/100

LewisLabUCSD/Mito_Trace#19 · Opened Oct 27, 2020
account for mt_pos being a list not an int Open

todo

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

LewisLabUCSD/Mito_Trace#15 · Opened Oct 26, 2020
Add the MT clone map that can contain multiple mutants in lineages Open

todo

Difficulty 5/5 Over a week Newbie friendliness 25/100

LewisLabUCSD/Mito_Trace#6 · Opened Oct 21, 2020
From bam to UMIs and cell filter Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

LewisLabUCSD/Mito_Trace#1 · 1 comment · Opened Feb 4, 2020

LewisLabUCSD/Mito_Trace

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