LewisLabUCSD / LewisLabUCSD/Mito_Trace
Implement mgatk
Open
Nobody has claimed this yet.
- Dominant language
- Jupyter Notebook
- Stars
- 0
- Forks
- 0
- PR merge metrics
- No merged PRs in 30d
Description
- Test mgatk for tenx data and their data.
- Adjust simulated data to save as mgatk input
- Adjust simulated data to have forward/reverse concordance values as well (gaussian mixture)
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by locating the simulation code and the existing tenx-data test path, then determine how mgatk input and forward/reverse concordance values are represented. Done means tenx data is tested, simulated data can be consumed by mgatk, and simulated data includes the requested concordance values.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- bioinformatics, testing-qa
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100