tight_layout gives segfault when MKL is used
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Mô tả
This gives a segfault:
```julia
using MKL
using PyPlot
fig = PyPlot.figure()
plot(rand(10), rand(10))
tight_layout()
```
```
signal (11): Segmentation fault
in expression starting at REPL[5]:1
mkl_blas_avx2_xdcopy at /home/jmlim/.julia/artifacts/72d4adc3ef9236a92f4fefeb0291cb6e8aaae2d7/lib/libmkl_avx2.so.1 (unknown line)
mkl_blas_dcopy at /home/jmlim/.julia/artifacts/72d4adc3ef9236a92f4fefeb0291cb6e8aaae2d7/lib/libmkl_intel_thread.so.1 (unknown line)
dcopy_ at /home/jmlim/.julia/artifacts/72d4adc3ef9236a92f4fefeb0291cb6e8aaae2d7/lib/libmkl_intel_ilp64.so.1 (unknown line)
DOUBLE_inv at /home/jmlim/appl/miniconda3/lib/python3.8/site-packages/numpy/linalg/_umath_linalg.cpython-38-x86_64-linux-gnu.so (unknown line)
PyUFunc_GenericFunction_int at /home/jmlim/appl/miniconda3/lib/python3.8/site-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so (unknown line)
ufunc_generic_call at /home/jmlim/appl/miniconda3/lib/python3.8/site-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so (unknown line)
_PyObject_MakeTpCall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
function_code_fastcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
PyVectorcall_Call at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
array_implement_array_function at /home/jmlim/appl/miniconda3/lib/python3.8/site-packages/numpy/core/_multiarray_umath.cpython-38-x86_64-linux-gnu.so (unknown line)
PyCFunction_Call at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyObject_MakeTpCall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalCodeWithName at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyFunction_Vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
function_code_fastcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalCodeWithName at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyFunction_Vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalCodeWithName at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyFunction_Vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalCodeWithName at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyFunction_Vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
PyVectorcall_Call at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalCodeWithName at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyFunction_Vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
method_vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
call_function at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
function_code_fastcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
PyVectorcall_Call at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalFrameDefault at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyEval_EvalCodeWithName at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
_PyFunction_Vectorcall at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
PyVectorcall_Call at /home/jmlim/appl/miniconda3/lib/libpython3.8.so.1.0 (unknown line)
macro expansion at /home/jmlim/.julia/packages/PyCall/3fwVL/src/exception.jl:95 [inlined]
#107 at /home/jmlim/.julia/packages/PyCall/3fwVL/src/pyfncall.jl:43 [inlined]
disable_sigint at ./c.jl:458 [inlined]
__pycall! at /home/jmlim/.julia/packages/PyCall/3fwVL/src/pyfncall.jl:42 [inlined]
_pycall! at /home/jmlim/.julia/packages/PyCall/3fwVL/src/pyfncall.jl:29
_pycall! at /home/jmlim/.julia/packages/PyCall/3fwVL/src/pyfncall.jl:11 [inlined]
#pycall#113 at /home/jmlim/.julia/packages/PyCall/3fwVL/src/pyfncall.jl:83 [inlined]
pycall at /home/jmlim/.julia/packages/PyCall/3fwVL/src/pyfncall.jl:83 [inlined]
#tight_layout#125 at /home/jmlim/.julia/packages/PyPlot/XaELc/src/PyPlot.jl:177
tight_layout at /home/jmlim/.julia/packages/PyPlot/XaELc/src/PyPlot.jl:174
unknown function (ip: 0x2b0f574bbebf)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1788 [inlined]
do_call at /buildworker/worker/package_linux64/build/src/interpreter.c:126
eval_value at /buildworker/worker/package_linux64/build/src/interpreter.c:215
eval_stmt_value at /buildworker/worker/package_linux64/build/src/interpreter.c:166 [inlined]
eval_body at /buildworker/worker/package_linux64/build/src/interpreter.c:587
jl_interpret_toplevel_thunk at /buildworker/worker/package_linux64/build/src/interpreter.c:731
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:885
jl_toplevel_eval_flex at /buildworker/worker/package_linux64/build/src/toplevel.c:830
jl_toplevel_eval_in at /buildworker/worker/package_linux64/build/src/toplevel.c:944
eval at ./boot.jl:373 [inlined]
eval_user_input at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:150
repl_backend_loop at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:244
start_repl_backend at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:229
#run_repl#47 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:362
run_repl at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.7/REPL/src/REPL.jl:349
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429
#930 at ./client.jl:394
jfptr_YY.930_32578.clone_1 at /home/jmlim/appl/julia-1.7.0/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1788 [inlined]
jl_f__call_latest at /buildworker/worker/package_linux64/build/src/builtins.c:757
#invokelatest#2 at ./essentials.jl:716 [inlined]
invokelatest at ./essentials.jl:714 [inlined]
run_main_repl at ./client.jl:379
exec_options at ./client.jl:309
_start at ./client.jl:495
jfptr__start_43127.clone_1 at /home/jmlim/appl/julia-1.7.0/lib/julia/sys.so (unknown line)
_jl_invoke at /buildworker/worker/package_linux64/build/src/gf.c:2247 [inlined]
jl_apply_generic at /buildworker/worker/package_linux64/build/src/gf.c:2429
jl_apply at /buildworker/worker/package_linux64/build/src/julia.h:1788 [inlined]
true_main at /buildworker/worker/package_linux64/build/src/jlapi.c:559
jl_repl_entrypoint at /buildworker/worker/package_linux64/build/src/jlapi.c:701
main at julia (unknown line)
__libc_start_main at /lib64/libc.so.6 (unknown line)
unknown function (ip: 0x400808)
Allocations: 7008166 (Pool: 7005366; Big: 2800); GC: 8
Segmentation fault (core dumped)
```
But this doesn't (MKL is used after PyPlot):
```julia
using PyPlot
using MKL
fig = PyPlot.figure()
plot(rand(10), rand(10))
tight_layout()
```
```julia
julia> versioninfo()
Julia Version 1.7.0
Commit 3bf9d17731 (2021-11-30 12:12 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) CPU E5-2630 v3 @ 2.40GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-12.0.1 (ORCJIT, haswell)
Environment:
JULIA = /home/jmlim/appl/julia-1.7.0/bin/julia
(@v1.7) pkg> status MKL
Status `~/.julia/environments/v1.7/Project.toml`
[33e6dc65] MKL v0.4.2
(@v1.7) pkg> status PyPlot
Status `~/.julia/environments/v1.7/Project.toml`
[d330b81b] PyPlot v2.10.0
(@v1.7) pkg> status PyCall
Status `~/.julia/environments/v1.7/Project.toml`
[438e738f] PyCall v1.92.5
```
Hướng dẫn đóng góp
Chưa lập chỉ mục được hướng dẫn đóng góp cho kho mã nguồn này
Hướng nghiên cứu
Tái hiện hai ví dụ về thứ tự import bằng Julia 1.7, MKL 0.4.2, PyPlot 2.10.0 và PyCall 1.92.5. Bắt đầu tại src/PyPlot.jl, xung quanh tight_layout (các dòng 174-177), và lần theo lệnh gọi PyCall được hiển thị trong trace. Hoàn thành khi tight_layout không còn gây ra segfault khi MKL được tải trước PyPlot, đồng thời hành vi được báo cáo vẫn được bao phủ bởi một regression test.
Do mô hình lập chỉ mục viết ra từ nội dung của issue.
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