INCATools/semantic-sql

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SQL and SQLite builds of OWL ontologies

Stars: 69
Forks: 7
Open beginner issues: 0
Indexed issues: 19
Avg merge: 8m
Merged PRs (30d): 1

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Aug 18, 2026
Latest indexed: Sep 17, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: help wanted

Beginner friendly Everything

Open All

19 issues indexed so far

prefix table: 774 redundant rows, and 3 prefixes carrying another resource's base Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

INCATools/semantic-sql#124 · Opened Sep 10, 2026
Migrate direct raw-S3 bbop-sqlite consumers to the semanticsql CDN Open

help wanted

INCATools/semantic-sql#115 · 7 comments · 1 assignee · Opened Jul 14, 2026
[bot] Cut a semsql release including the semanticsql.berkeleybop.io default Open

enhancement

INCATools/semantic-sql#114 · 2 comments · 1 reaction · 1 assignee · Opened Jul 14, 2026
Evaluate sqlite-zstd compression as alternative to gzip Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

INCATools/semantic-sql#111 · 1 comment · Opened Jul 2, 2026
Integrate ENERO Foundry ontologies into Semantic-SQL Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

INCATools/semantic-sql#107 · Opened Mar 30, 2026
using semantic sql in R: a vignette Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 45/100

INCATools/semantic-sql#106 · 3 comments · Opened Mar 22, 2026
match table skos predicates incorrect Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

INCATools/semantic-sql#101 · 1 comment · Opened Oct 18, 2025
Handling KEGG Prefixes with Identical URI Resolution Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/semantic-sql#98 · 2 comments · Opened Feb 21, 2025
Add graph column to main schema Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

INCATools/semantic-sql#97 · Opened Feb 21, 2025
Export formats Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

INCATools/semantic-sql#96 · 2 comments · Opened Feb 14, 2025
Add a duckdb export or convert base layer to duckdb Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

INCATools/semantic-sql#82 · Opened Apr 26, 2024
Improve speed of converting SQLite to FHIR Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/semantic-sql#64 · 2 comments · Opened Dec 15, 2022
Create a demo of querying OBO in SQL in the browser using sql.js Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

INCATools/semantic-sql#63 · 4 comments · Opened Dec 1, 2022
Make semsql prefix maps configurable Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

INCATools/semantic-sql#51 · 4 comments · Opened Aug 29, 2022
Add semsql CLI docs Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

INCATools/semantic-sql#50 · Opened Aug 29, 2022
Left over intermediate artefacts Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

INCATools/semantic-sql#47 · 5 comments · Opened Aug 10, 2022
SQLite console opens (0.1.7) Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

INCATools/semantic-sql#46 · 4 comments · Opened Aug 10, 2022
Include PyOBO products Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

INCATools/semantic-sql#45 · 6 comments · Opened Jul 14, 2022
Make everything installable via PyPI Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

INCATools/semantic-sql#41 · 11 comments · Opened Jun 13, 2022

INCATools/semantic-sql

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