LinkageCheckerMain shows duplicate causes

When running LinkageCheckerMain for Beam, https://gist.github.com/suztomo/0ba02d93aa0b2f5d9701c50f7d7fd81f had duplicate "Dependency conflict" cause for one linkage error. For example:

```
Class com.google.pubsub.v1.DeleteSchemaRequest is not found;
Exception in thread "main" referenced by 2 class files
com.google.cloud.pubsub.v1.stub.GrpcSchemaServiceStub (com.google.cloud:google-cloud-pubsub:1.111.0)
com.google.cloud.pubsub.v1.SchemaServiceClient (com.google.cloud:google-cloud-pubsub:1.111.0)
Cause:
Dependency conflict: com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 does not define Class com.google.pubsub.v1.DeleteSchemaRequest but com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 defines it.
selected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 (compile)
unselected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.cloud:google-cloud-pubsub:1.111.0 (compile) / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 (compile)
Dependency conflict: com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 does not define Class com.google.pubsub.v1.DeleteSchemaRequest but com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 defines it.
selected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 (compile)
unselected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.cloud:google-cloud-pubsub:1.111.0 (compile) / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 (compile)

```

and

```
Class com.google.pubsub.v1.ListSchemasResponse is not found;
referenced by 3 class files
at com.google.cloud.tools.opensource.classpath.LinkageCheckerMain.main(LinkageCheckerMain.java:76)
com.google.cloud.pubsub.v1.stub.SchemaServiceStubSettings (com.google.cloud:google-cloud-pubsub:1.111.0)
com.google.cloud.pubsub.v1.stub.GrpcSchemaServiceStub (com.google.cloud:google-cloud-pubsub:1.111.0)
com.google.cloud.pubsub.v1.SchemaServiceClient (com.google.cloud:google-cloud-pubsub:1.111.0)
Cause:
Dependency conflict: com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 does not define Class com.google.pubsub.v1.ListSchemasResponse but com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 defines it.
selected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 (compile)
unselected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.cloud:google-cloud-pubsub:1.111.0 (compile) / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 (compile)
Dependency conflict: com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 does not define Class com.google.pubsub.v1.ListSchemasResponse but com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 defines it.
selected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 (compile)
unselected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.cloud:google-cloud-pubsub:1.111.0 (compile) / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 (compile)
Dependency conflict: com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 does not define Class com.google.pubsub.v1.ListSchemasResponse but com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 defines it.
selected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.90.3 (compile)
unselected: org.apache.beam:beam-sdks-java-io-google-cloud-platform:jar:2.29.0-SNAPSHOT / com.google.cloud:google-cloud-pubsub:1.111.0 (compile) / com.google.api.grpc:proto-google-cloud-pubsub-v1:1.93.0 (compile)
```