FNNDSC/med2image

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Converts medical images to more displayable formats, e.g. NIfTI to jpg.

Stars: 205
Forks: 57
Open beginner issues: 0
Indexed issues: 30

Dominant language: Python
License: MIT
Last GitHub push: Apr 28, 2022
Latest indexed: Sep 16, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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30 open issues indexed

some dcm files do not work Open

FNNDSC/med2image#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
can not assume most of dicom fields are there Open

FNNDSC/med2image#2 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Co-ordinates are mismatch, when i convert from .nii to jpeg Open

FNNDSC/med2image#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
4D Volumes stuck on frame 000 Open

FNNDSC/med2image#7 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
problem with med2image Open

FNNDSC/med2image#8 · 12 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Updates Open

FNNDSC/med2image#9 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
How to run med2image from jupyter notebook Open

FNNDSC/med2image#11 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
NameError: name 'C_convert' is not defined Open

FNNDSC/med2image#12 · 5 comments · 1 reaction · 0 assignees · Indexed Sep 16, 2026
Problem in conversion of nii to png Open

FNNDSC/med2image#13 · 12 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Greyscale images should be saved as single channel image Open

FNNDSC/med2image#14 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
pfdicomtag Open

FNNDSC/med2image#15 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
can't find '__main__' module in 'med2image' Open

FNNDSC/med2image#17 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Unable to convert it from nii to jpg. Need little insight Open

FNNDSC/med2image#18 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
I do not know how to use this package in both Windows command line environment and Python 3 Jupyter Notebook environment. If you could explain how to use med2image? The description on https://pypi.org/project/med2image/#description is insufficient to explain how to use this package. Thanks. Open

FNNDSC/med2image#19 · 9 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
In unix, you have to write `python3 med2image ...` Open

FNNDSC/med2image#20 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Getting this error while trying to convert Open

FNNDSC/med2image#21 · 3 comments · 1 reaction · 0 assignees · Indexed Sep 16, 2026
can't find '__main__' module in 'med2image' Open

FNNDSC/med2image#22 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
'dev' branch modernization Open

FNNDSC/med2image#24 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
merge dev->master Open

FNNDSC/med2image#26 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Initial exploration of ideas Open

FNNDSC/med2image#27 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
xmedcon Open

FNNDSC/med2image#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Error with covert (screen shot attached.) Open

FNNDSC/med2image#31 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
converting in only 'x' or 'y' directions? Open

FNNDSC/med2image#32 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Unification of pl-med2img, pfdo_med2image, pl-pfdo_med2img Open

FNNDSC/med2image#33 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
How to convert all .nii images into 2d jpg images from a directory? Open

FNNDSC/med2image#35 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Traceback (most recent call last): File "/media/lab549/CE56C94660FE3E83/semantic_segmentation_xhq/code_xhq/Duo-SegNet-main/venv/bin/med2image", line 17, in <module> from med2image import med2image File "/media/lab549/CE56C94660FE3E83/semantic_segmentation_xhq/code_xhq/Duo-SegNet-main/venv/lib/python3.5/site-packages/med2image/med2image.py", line 711 l_filesInDir:list= [] ^ SyntaxError: invalid syntax Open

FNNDSC/med2image#37 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Incorrect scale after image convert Open

FNNDSC/med2image#38 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
support for converting from DICOM to NIFTI ? Open

FNNDSC/med2image#40 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
select range of slices Open

FNNDSC/med2image#41 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Nibabel error Open

FNNDSC/med2image#42 · 2 comments · 2 reactions · 0 assignees · Indexed Sep 16, 2026

FNNDSC/med2image

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