DiamondLightSource/Savu

View on GitHub

Tomography Reconstructon Pipeline

Stars: 43
Forks: 42
Open beginner issues: 0
Indexed issues: 105

Dominant language: Python
License: No license data
Last GitHub push: Aug 18, 2022
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted
PR merge metrics: No merged PRs in 30d

Open All

105 open issues indexed

Use the new multiCPU plugin for the cgls plugin Open

enhancement

DiamondLightSource/Savu#34 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add a Monitoring Process "MON" to the pipeline Open

enhancement ready

DiamondLightSource/Savu#129 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Create new Backend with hdf5 Virtual Dataset Open

enhancement

DiamondLightSource/Savu#147 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Improve auto-chunking Open

enhancement

DiamondLightSource/Savu#154 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add function to configurator to replicate process list for different datasets Open

DiamondLightSource/Savu#162 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Allow missing frames in loader Open

DiamondLightSource/Savu#169 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Write a test to validate all plugins against an API Open

DiamondLightSource/Savu#179 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add info in developer doc about Executive Summary Open

enhancement

DiamondLightSource/Savu#191 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Update private functions and docstrings in savu.core.utils Open

ready

DiamondLightSource/Savu#193 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Make a test system for large data Open

DiamondLightSource/Savu#195 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Set test of tests to break if plugin not covered Open

DiamondLightSource/Savu#196 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add a test to check create dataset helper functions Open

DiamondLightSource/Savu#201 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
passing tiff folder path Open

DiamondLightSource/Savu#217 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Parameter incompatibility checking ? Open

DiamondLightSource/Savu#219 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Start porting to python 3 Open

in progress

DiamondLightSource/Savu#233 · 3 comments · 0 reactions · 3 assignees · Indexed Sep 15, 2026
Look at data for Posters and Presentations Open

ready

DiamondLightSource/Savu#237 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Need a simple utility to compare (diff?) two process lists Open

DiamondLightSource/Savu#239 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
SWMR integration Open

enhancement

DiamondLightSource/Savu#240 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Auto-generate api docs on readthedocs Open

DiamondLightSource/Savu#246 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Load data with multiple exposure per projection Open

DiamondLightSource/Savu#257 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
change the xrd loaders to look for calibration data inside the file first Open

DiamondLightSource/Savu#259 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
write plugin for ptypy for probe and position generation Open

DiamondLightSource/Savu#262 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
deblurring filters Open

DiamondLightSource/Savu#264 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Centering for nano tomography Open

DiamondLightSource/Savu#265 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Incremental PCA Open

DiamondLightSource/Savu#266 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add process branching option Open

DiamondLightSource/Savu#279 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add a multi-resolution option to standard reconstructions Open

in progress

DiamondLightSource/Savu#282 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add an item to the user log saying where the log is Open

ready

DiamondLightSource/Savu#283 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add a flag to keep meta data Open

DiamondLightSource/Savu#284 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Output graph visualisation of the process list Open

DiamondLightSource/Savu#285 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add detector tilt in Astra 3D Open

DiamondLightSource/Savu#288 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
Add res_norm to astra 3D Open

DiamondLightSource/Savu#289 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Average replicated data (angle +180...) in astra recon Open

DiamondLightSource/Savu#292 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add executive summary to astra Open

DiamondLightSource/Savu#294 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Improve zenodo information in readme file Open

DiamondLightSource/Savu#296 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Show pattern information in configurator Open

DiamondLightSource/Savu#297 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Update median filter Open

DiamondLightSource/Savu#304 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Plugin entry in nexus does not include 'off' processes Open

DiamondLightSource/Savu#306 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add multi-dimensional COR and amend on previewing Open

DiamondLightSource/Savu#311 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Normalise data based on incoming beam intencity Open

DiamondLightSource/Savu#321 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Passing metadata from GPU processes to all other processes Open

question

DiamondLightSource/Savu#322 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Overhaul metadata in create dataset Open

DiamondLightSource/Savu#323 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
multiple axes not supported Open

DiamondLightSource/Savu#325 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Generalise NXTomo loader to load from the NXtomo location Open

DiamondLightSource/Savu#327 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Amend median filter to work for 2D and 3D datasets Open

DiamondLightSource/Savu#329 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add options information into .nxs file Open

DiamondLightSource/Savu#335 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
potential array overrun in dezing_filter.py Open

DiamondLightSource/Savu#337 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Manage verbosity of plugins Open

DiamondLightSource/Savu#338 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Restrict dezing to one thread by default Open

DiamondLightSource/Savu#339 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Amend Init_vol to work with preview in base recon Open

DiamondLightSource/Savu#340 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026

DiamondLightSource/Savu

Get new issues in your inbox