AllenNeuralDynamics / AllenNeuralDynamics/spim-core

Folder / File structure and naming conventions

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Description

Dataset folder name should be: `__--_--`

Imaging folder should change from **micr** to the name of the microscope (i.e: `exaspim`) in all lowercase and should only contain volumetric image data.

Tile naming convention should be:
`tile_X__Y__Z__CH_.ims` where `xxxx`, `yyyy`, and `zzzz` are the tile indices of the stack encoded as four digit values.

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