AllenNeuralDynamics / AllenNeuralDynamics/clabe

Requirements for configuration tracking

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#100 3 comentarios 0 reacciones 0 asignados Ver en GitHub
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Python
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Descripción

A module to track animal-related configuration would be useful to agilize experiments. A short term solution would be to extend the current default picker with a more opinionated logic on how to fetch and validate a full session of a given animal. Alternatively, this could ideally be handled by a centralized data base structure.

Requirements: (Mostly derived from VrForaging but in theory applicable to other pipelines)
- We need to be able to store JSON documents (bonus for other asset types?)
- From a rig_id (`aibs_rig_id` and a task (`task_name`), grab rig configuration (or potentially multiple if available)
- List multiple task configuration files (these would be used as defaults if needed)
- From an animal id, return a task_configuration (`task_logic.json` or a `CurriculumState`, both of which are sufficient to grab a `task_name`).
- From an animal id, return a experimental schedule: e.g. Experimenter, `aibs_rig_id`, TimeOfDay, etc...
- From a given rig configuration instance, grab a rig.json (aind-data-schema)
- Need an API to read and write to the collection. Ideally Python, but bonus if also C#.
- Ideally would store all the documents ever written/updates

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