AllenNeuralDynamics/aind_data_outreach

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Indexed issues: 64

Dominant language: Python
License: MIT
Last GitHub push: Apr 24, 2026
Latest indexed: Sep 13, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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64 open issues indexed

Invalid/corrupt metadata files Open

Metadata

AllenNeuralDynamics/aind_data_outreach#17 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Thalmanac comprehensive pipeline Open

Analysis

AllenNeuralDynamics/aind_data_outreach#34 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Video for generating metadata w/ pydantic Open

documentation

AllenNeuralDynamics/aind_data_outreach#36 · 5 comments · 0 reactions · 3 assignees · Indexed Sep 13, 2026
Compile list of intermediate/advanced tutorial topics Open

documentation

AllenNeuralDynamics/aind_data_outreach#43 · 2 comments · 0 reactions · 4 assignees · Indexed Sep 13, 2026
Specimen procedures have an extra field for "subject_id" with a different subject_id than the asset Open

Metadata

AllenNeuralDynamics/aind_data_outreach#51 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Follow up on model metadata new schema usage Open

Metadata

AllenNeuralDynamics/aind_data_outreach#53 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
MERFISH vs Carter lab data integration Open

Analysis

AllenNeuralDynamics/aind_data_outreach#58 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Write Data Platform paper Open

paper

AllenNeuralDynamics/aind_data_outreach#69 · 1 comment · 0 reactions · 2 assignees · Indexed Sep 13, 2026
Write Metadata schema paper Open

paper

AllenNeuralDynamics/aind_data_outreach#70 · 2 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
2D/3D densities from Smartspim cells Open

AllenNeuralDynamics/aind_data_outreach#73 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
CO R user experience support Open

Analysis

AllenNeuralDynamics/aind_data_outreach#77 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Get data out of private buckets Open

AllenNeuralDynamics/aind_data_outreach#78 · 4 comments · 0 reactions · 3 assignees · Indexed Sep 13, 2026
Write SWDB Databook tutorial on using Xarray Open

documentation SWDB Workshop

AllenNeuralDynamics/aind_data_outreach#79 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Support other atlases in thalmanac Open

Analysis

AllenNeuralDynamics/aind_data_outreach#87 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Basic example of morphology feature calculation using analysis architecture Open

Analysis

AllenNeuralDynamics/aind_data_outreach#109 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
NWB for slice physiology Open

AllenNeuralDynamics/aind_data_outreach#116 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Create benchmark for aind-metadata-viz llm Open

AllenNeuralDynamics/aind_data_outreach#122 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
NP Ultra Interneurons data reorganization Open

SWDB

AllenNeuralDynamics/aind_data_outreach#128 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add How to cite to morphology portal Open

AllenNeuralDynamics/aind_data_outreach#129 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Publish Data Infrastructure page to AIND Website Open

Website

AllenNeuralDynamics/aind_data_outreach#182 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
Publish population ophys platform page Open

Website

AllenNeuralDynamics/aind_data_outreach#183 · 1 comment · 0 reactions · 2 assignees · Indexed Sep 13, 2026
Publish Virtual Reality Protocol Open

Protocols

AllenNeuralDynamics/aind_data_outreach#201 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Publish Registering MRI Volumes to Ephys Rig Protocol Open

Protocols

AllenNeuralDynamics/aind_data_outreach#211 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
Publish Mouse Habituation Protocol Open

Protocols

AllenNeuralDynamics/aind_data_outreach#209 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
tool to add s3 mount capability for external use of public CO capsules Open

AllenNeuralDynamics/aind_data_outreach#194 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
share tools for settings sync in codeocean Open

internal support

AllenNeuralDynamics/aind_data_outreach#195 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
adapt processing.json generation for post-capsule usage Open

AllenNeuralDynamics/aind_data_outreach#199 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
analysis framework example for workshops etc Open

AllenNeuralDynamics/aind_data_outreach#214 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Support for Ulises metadata - derived asset from DANDI data Open

internal support Metadata

AllenNeuralDynamics/aind_data_outreach#215 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Upgrade NP Ultra rig Open

Metadata

AllenNeuralDynamics/aind_data_outreach#216 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
gh action to add tags for CO releases Open

AllenNeuralDynamics/aind_data_outreach#239 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
clean up quicknii registration code Open

AllenNeuralDynamics/aind_data_outreach#248 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
explore hosting webalign/warp tools with s3 access Open

AllenNeuralDynamics/aind_data_outreach#249 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026
CO syncing github action Open

AllenNeuralDynamics/aind_data_outreach#251 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
support all types in auto-app-panel Open

AllenNeuralDynamics/aind_data_outreach#259 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
find minimal example for bug with pushing to CO git repo Open

AllenNeuralDynamics/aind_data_outreach#261 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
explore brainrender/vedo/pyvista for CAT session Open

AllenNeuralDynamics/aind_data_outreach#263 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
"Project" level views that are neither project_name or subject_id alone Open

AllenNeuralDynamics/aind_data_outreach#264 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
script/app to check capsule data status before release Open

AllenNeuralDynamics/aind_data_outreach#265 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
update exaspim LC asset metadata Open

AllenNeuralDynamics/aind_data_outreach#272 · 7 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026
create CO run scheduler roadmap proposal Open

AllenNeuralDynamics/aind_data_outreach#279 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
pin down work items for thalamus tools manuscript Open

AllenNeuralDynamics/aind_data_outreach#282 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
explore CAJAL embeddings for RT morphology analysis Open

AllenNeuralDynamics/aind_data_outreach#283 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
public collection highlighting commonly used reference data like CCF / ABC atlas Open

AllenNeuralDynamics/aind_data_outreach#285 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
support code release for Thalamus tools manuscript (Marcus) Open

AllenNeuralDynamics/aind_data_outreach#286 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
support exaspim QC Open

AllenNeuralDynamics/aind_data_outreach#290 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
analysis framework pipeline for smartspim injection volume quantification Open

AllenNeuralDynamics/aind_data_outreach#291 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Confocal imaging ingest Open

Metadata

AllenNeuralDynamics/aind_data_outreach#292 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Publish Thick-Tissue Multi-Round RNA-FISH on Expanded Mouse Brain Slices Following in vivo 2-photon Imaging Protocol Open

Protocols

AllenNeuralDynamics/aind_data_outreach#295 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Respiration data challenge Open

AllenNeuralDynamics/aind_data_outreach#297 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026

AllenNeuralDynamics/aind_data_outreach

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